Ochrobactrum sp. MT180101: HGK82_20690
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Entry
HGK82_20690 CDS
T07147
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocr
Ochrobactrum sp. MT180101
Pathway
ocr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HGK82_20690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocr03400
]
HGK82_20690 (mfd)
Enzymes [BR:
ocr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HGK82_20690 (mfd)
DNA repair and recombination proteins [BR:
ocr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HGK82_20690 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
RecG_dom3_C
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
QOD65529
LinkDB
All DBs
Position
2:complement(1611952..1615464)
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AA seq
1170 aa
AA seq
DB search
MPVFSKLGLKSSSALGANRHIVIDGVADGYEAFCLIRLAEEIGERGPIMYIVRDGQRIAD
LEQVLSFVAPDMPVLHLPAWDCLPYDRVSPGADASARRLAALSALSQLKKAPHPAIILTT
ANAVLQKLPPEAAIAEQVISARPGNQLDMNDLASRLERNGFERVSTVRDIGEFAVRGGIL
DLYAPGAEEPLRLDFFGDTLESIRAFDPASQRTTGTRKEFVLQPMSEITLSPDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDKLDTVFDHAGNMPVVFDHLVHEA
LTERHTMVVDHYEARLRQAEGKEPGSDAVPYKPVKPEALYLTPSEVEKHAEAGGMRIDLT
PFGAPEVTGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIAELRAAGKKVLVAAWTEG
SLDRLLQVLDEHGLEKIESVDRLSTVKALSRDKVTAAVLAVESGFDAGDLVIVAEQDILG
DRLIRRSKRRKRDQDFISEVASLNAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRYGSESSDAVLDKLGGGAWQMRKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMTPPDGLYAEFSARFPYDETDDQLTAIESVADDLAAGKPMDRLICGDVGFGKT
EVALRAAFIAAMSGVQVAIVVPTTLLSRQHFKTFSKRFHGLPINLAHASRLVGTKELAAA
KKGLEEGTVDIVVGTHALLGNSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
CPRISDLGEIEEFLKTHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLTQMAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGVGEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAELIDRFGPMPDEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRNATFANPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWPTPEKRLNGSAVIMTQLAKIAAG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttcagcaaactaggtctcaagtcctccagcgcgctcggggcaaatcgtcat
atcgtgatcgacggcgttgccgacggttacgaggcgttctgtcttattcgtctggcggaa
gagatcggcgaacgcgggccgattatgtatatcgtgcgcgacgggcagcgcattgccgat
ctggagcaggtcttgagtttcgtggcgccggatatgccggttctgcatctgcctgcatgg
gattgtttgccttatgaccgcgtatcgcccggtgcagacgcatcggcacgtcggctcgcc
gcactcagtgcgctgtcccagcttaaaaaggcaccgcatcctgccatcattctcaccaca
gccaatgccgttctgcaaaagctgccgccggaagcggcgatagccgaacaggtgatttcg
gcgcgtcccggcaaccagctggatatgaacgatctggcatcccggctggagcgcaacggt
ttcgaacgtgtttccaccgtgcgcgacatcggcgaatttgcagttcgtggtggtattctc
gatctttatgcacccggcgcggaagagccgttgcggcttgatttctttggcgacacactg
gaatcgatccgcgctttcgatccggcttcgcagcgtaccacgggcacacgcaaggagttc
gtgctccagccgatgagcgaaatcacgctttcgccggacatgataagccgtttccgcaag
aattacgtcgcgatgttcggtgcgccgcagcgcgatgacgcgctttatcaggcgatcagt
gaaggtcgtcgctttgcgggcatggaacattggctgccgcttttctacgacaagcttgat
accgtcttcgaccatgcgggcaatatgccggtggttttcgatcatctggtgcatgaagcg
ctgaccgagcgccacacaatggttgtcgatcactacgaagcgcggctgagacaggcggag
ggcaaggagccgggcagtgatgccgtgccttacaagccggtcaagccggaagcgctttat
ttaaccccgtcagaggtcgagaagcacgctgaggccggaggtatgcgcatcgacctgacg
ccattcggtgcgccggaggttacggggcggacgattattcatgccgatgtgcacaagggc
cgcagctttgccgaggagcgcgcggccaccgacgtgaacctgttcgaagcggtggtgaag
catattgccgaactgcgtgcagcgggcaagaaagtgctggttgctgcctggactgaaggt
tctctcgaccgtcttttgcaggtcctggatgaacatgggctggaaaagatcgagtcggtt
gaccggctttctaccgtcaaggcgctgtcacgcgacaaggtgacggcggcggtgctggcc
gtcgagagcggattcgacgcgggcgatctcgtcatcgtggctgagcaggatattctgggc
gaccgtcttatccgccgttccaagcgccgcaagcgcgatcaggatttcatctcggaagtt
gcctcgctaaacgctggcgatatcgtcgtccatgtcgatcacggtatcggtcgcttcatt
ggcctcaagaccattaccgccgctggcgctccgcatgactgtcttgaaatccattatgcg
ggtgatgaccggctgtttctgccggtcgaaaatatcgagcttctgtcgcgctacggttcg
gaaagctccgatgcggttctcgacaagcttggcggtggcgcatggcagatgcgtaaggcc
aagctcaagaaacgcctgcttgagattgccgggcatctgatccagatcgccgccgaacgg
cagatgcgcggtgcgccggtgatgacgccgccagatggtctctatgccgaattttctgct
cgcttcccctatgatgaaaccgacgaccagctgacggcaatcgagtccgtggcggacgat
ctggctgctggcaagccgatggatcgcctgatctgtggtgatgtaggcttcggcaagacg
gaagtagccctgcgtgctgccttcattgcggcgatgagtggcgttcaagtggcgatagtc
gtgccgacaacgctcctgtcgcgccagcatttcaagaccttctcgaagcgcttccatggc
ctgccgatcaatcttgcccatgcctcgcgtcttgtcggcacgaaggagcttgctgctgcc
aagaaagggctggaagaaggaactgtcgatattgtcgtcggcacgcatgcgctgctcggc
aactcgatcaagttcaagaatctcggcctgctcatcatcgatgaagagcagcatttcggc
gtcaagcacaaggagcggctgaaggaactgaagtcggacgtgcatgtgctgacattgtcc
gccacgccgatcccgcgcactttgcagcttgcgctaaccggtgtgcgcgaactgtcgctc
atcaccacgccacccgtcgatcgtatggcggtgcgcaccttcgtctcaccgttcgatccg
ctcgtcattcgcgagacgcttttgcgcgaacgctatcgtggcggccagagtttctacgtc
tgcccgcgcatttccgatcttggcgagatagaggagttcctgaaaacgcacgtgcccgaa
ctgaaagtggccgtggcccatggtcagatggcgccgggcgtgctcgatgacatcatgaac
gccttctatgacggccagtatgatgtgcttctatccacgaccattgtggaatccggtctc
gatattccgacggccaacacgatgatcgtgcaccgcgccgatatgttcggtctggcacag
ctctaccagctgcgcggtcgtgttggtcgctcgaagcagcgcgctttcgcgctgtttaca
cttccggcaggtaagatgctgacgcagatggcggaacgtcgccttaaggttctgcagtcg
cttgacacgctgggcgcaggcttccagcttgccagccacgatatggatattcgcggggca
ggcaatctgctcggcgaggaacagtcgggccatatcaaggaagttggcttcgaactttac
cagcagatgctggaagaggcggtggccacgctcaagggtgtgggcgaagttgaagatagc
cagtggtcgccacagattgccatcggcacggctgtgatgatccccgaagcctatgtgcct
gacttgcagctgcgtcttggcctttatcgccgtctcgccgatctggaagagccacaggat
attgacgcattcggtgcggaactcatcgaccggtttggtccgatgccggatgaagtgcag
cacctgctcaagatcgtttacatcaaggcactctgccgccgtgcgaatgtcgagaaactc
gatgccggtccgaagggcgtggtcatccagttccgcaatgcgacattcgcaaatccggtc
gggctggtgaaaatgatcggcgagcaagggtccatggccaagatcaggccggatcagagc
atcgtcttcatccgcgactggccgacaccggaaaagcgcctcaacggttctgccgtcatc
atgacgcaactggcgaagatcgcggcgggttaa
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