Oceanotoga sp. DSM 15011: OF820_01920
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Entry
OF820_01920 CDS
T08543
Name
(GenBank) helicase-related protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocs
Oceanotoga sp. DSM 15011
Pathway
ocs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OF820_01920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocs03400
]
OF820_01920
Enzymes [BR:
ocs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF820_01920
DNA repair and recombination proteins [BR:
ocs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OF820_01920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
SelP_N
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYP00449
LinkDB
All DBs
Position
382260..385142
Genome browser
AA seq
960 aa
AA seq
DB search
MSLKKFIEENKEDKIKIYVLPEYFNINIDIKNTYYYPDFDIFPFENIDVSSNIKNQRINV
LNKIKKNQNINIITTFHSLTRYTIPPEDFKNIKYKMNENYDENLFEMGYQNVSEVRNNSE
YSKRGFIRDLYIPGEVLPNRIELFDKEIDRITYFDYNNQKSIKNIESIEIIPGSEILKFK
ENINKMKERIRDTIDINQLNTFPALFYKNKKTLFSYIKNDYEIIFINKDEIIKTFSEKEK
ENFEMCDDENKKLIYKEFSGLPLEIINTIKYKEYTLNLKNNTYKLKKENNTLESLPLIDW
EDLKEDDLVVHEDYGIALYKGIRKMKNALGEREYITLEYASKSRVFVPVERLDKLSKYLG
DKDTINISNLNGKKWKNTKKKVEEKIKQKVKQLIKIYALRENQKGIIIKGDEELEDQLKK
TFPYIETLDQIKCIEEINSDLENLKPMDRLLVGDAGFGKTEVAIRAAFKTIISNYQVLFL
APTTILSSQHYETLKERYEPFGINIELLNRNTTPKNREKIINNLKNGIIDILIGTHSLLN
EKINPKKLGLVIIDEEQRFGVLQKEKFKNLSKGVNFLMMSATPIPRTLYMSISGLREIST
ISTPPIGRIPIQSFIGKYSERIVRTAALREKGRGGQILYVHNRINTIEKVYKKLKDVIPE
LKIEYIHGRMNKSEINKKIKQYYEGEIDLLISTSIVENGIDIPNVNTLIIDDSQRYGISQ
LYQIKGRVGRSNKRAFAYFLYKDEKLKEESQKRLEAIKKFNEPGSGLKLALRDLEIRGYG
DLLGLDQKGHINSVGLHLYKNILEKVTNELLNEKEKEIIKNIEYTEIIGIRGNLLIPEKY
ISNSIDRMRIYRRISVSKNIDEVEELKNEINDRYGKIPIEVKELFEYAKIRVKASNQNIK
EIEIDEKYIRFKFSEEITPNLNIYKKYSKKVIYENNVNELISYGIKDPIKYLYKILEIGE
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaaaaaatttatagaagaaaacaaagaagataaaataaaaatatatgtatta
cctgaatactttaatataaatatagatataaagaatacttattattatcctgactttgat
atatttccatttgaaaatatagatgtttcctcaaatataaaaaatcaaagaataaatgta
ttaaataaaatcaaaaaaaatcagaatataaatattataactacattccattctttaacg
agatatacaatacctccagaagactttaaaaatataaaatataaaatgaatgaaaattat
gatgaaaatttatttgaaatgggatatcaaaatgtttcagaagtacgaaataactctgaa
tattccaaaagaggattcataagagatttatatataccaggagaggttttaccaaataga
atagaattatttgataaagaaatagatagaataacttattttgattataataatcagaaa
tctataaaaaatattgagagtatagaaataatacctggatctgaaatattaaaatttaaa
gaaaatataaataaaatgaaagaaagaataagagataccattgatataaatcaattaaat
acttttccggcactgttttataaaaataaaaaaacattgtttagttatataaaaaatgat
tatgaaataatttttataaataaagatgaaataataaaaacattttcagaaaaagaaaaa
gaaaattttgagatgtgtgatgatgaaaataaaaaacttatatacaaagaattttctgga
ttacctttagaaataataaatactataaaatataaagaatataccttaaacttaaaaaat
aacacttataaattaaaaaaagaaaataatactttagaatcattgccattgatagattgg
gaagatctaaaagaagatgatttagttgtgcatgaagattatggaatagctttatataaa
ggcataagaaaaatgaaaaatgctttaggcgaaagagaatatataacattagaatatgct
tctaaatcaagagtttttgtgccagtagaaagattagataaactttcaaagtaccttgga
gataaagatactataaatatatctaatttaaatggaaagaaatggaaaaataccaaaaaa
aaggtagaagaaaaaataaagcaaaaagtaaaacaattaataaaaatatatgctttaaga
gaaaatcaaaaaggaataataataaaaggtgatgaagaacttgaagatcagttaaaaaag
acatttccatatatagaaacattagatcaaattaaatgtattgaagaaataaattcagat
ttagaaaatttaaaacctatggatagattattggtaggagatgctggatttggcaaaact
gaagtcgctataagagcagctttcaaaacaataatttcgaattatcaagtgttattttta
gctcctactacaatattatcttctcaacattatgaaactttaaaagaaaggtatgaacct
tttggaataaatatagagcttttaaatagaaatacaacacctaaaaatagagaaaaaata
ataaataatttgaaaaatggaattatagatatattaataggaacacattctcttttaaat
gaaaaaataaatccgaaaaagttaggacttgtaataatagatgaagaacaaaggtttgga
gtattacaaaaagaaaaatttaaaaatctttcaaaaggtgtaaattttttaatgatgagc
gcaactccaattccaagaacattatatatgtcaataagtggattaagagaaatatcaact
atatcaactccacccatcggaagaatacctatacaatcatttataggtaaatactctgaa
agaattgttagaactgctgctcttagagaaaaaggaagaggtggtcagatactttatgtg
cacaatagaataaatactatagaaaaagtatataaaaaattaaaagatgtaattccagaa
ttaaaaatagaatatatacatggaagaatgaataaaagtgaaataaacaaaaaaataaaa
caatattatgaaggtgaaatagatttattgatatcaacatcaatagttgaaaatggaata
gatattcctaatgttaacactttaataatagacgattctcaaagatatggaatttctcaa
ttatatcaaataaaaggtagagttggtagatctaataaaagagcattcgcatatttttta
tacaaagatgaaaaattaaaagaagaaagtcaaaaaagacttgaagccattaaaaaattt
aatgaacctggttcaggattaaaattagctcttagagacttagaaataagaggctatgga
gatttattagggttagatcaaaaaggtcatattaattcagtagggctacatttatataaa
aatatacttgaaaaagttacgaatgaattattaaatgaaaaagaaaaagaaattataaaa
aatattgaatatacagaaattataggaataaggggaaatttattgataccagaaaaatat
atatcaaattctatagatagaatgagaatatataggagaatttctgttagtaagaatatt
gatgaagttgaagaattaaaaaatgaaataaatgatagatatggtaaaatcccaatagaa
gtaaaagaactatttgaatatgctaagataagagtaaaagcaagtaatcaaaatataaaa
gaaattgaaatagatgaaaaatatataagatttaagttttcagaagaaattactccaaat
ttaaatatatataaaaaatattcaaaaaaagttatatatgaaaataatgtaaatgaatta
ataagttatggaataaaagatcctataaaatatttatataaaatattagaaattggagag
tga
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