Octadecabacter sp. SW4: FTO60_06720
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Entry
FTO60_06720 CDS
T06209
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
oct
Octadecabacter sp. SW4
Brite
KEGG Orthology (KO) [BR:
oct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oct03016
]
FTO60_06720 (rnd)
Enzymes [BR:
oct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FTO60_06720 (rnd)
Transfer RNA biogenesis [BR:
oct03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FTO60_06720 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QEE35425
UniProt:
A0A5B9EMF8
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Position
1359216..1360376
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AA seq
386 aa
AA seq
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MKTITTTDDLAEFCTRAAAFPYVTVDTEFLRERTYYSKLCLIQLAFAGDGKDDAVLVDPL
ADGLSLDPLYALFADHGVVKVFHAARQDLEIFYVDKGVIPEPLFDTQVAAMVCGFGEQVG
YETLVRKIVREQVDKSSRFTDWSRRPLTDAQKTYALADVTHLRGVYEFLAAELAKSGRHK
WVAEEMAILNAPETYRADPDRAWERVKTRTNSGKFLAIVRELARFREFYAQSRDVPRTRV
FKDDALVELASTKPASEQDLGRSRLLLREARRGEIAEGILAAVQAGINTRPEDMPNPDRS
REKLQVNPALADLLRVLLKAKAEGEGVAQKLIANASDLDLIAAGQRDVAALKGWRKEVFG
EDALRLCDGKVALAAKGGNVIAVNLD
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccatcacaacgaccgacgatctcgcggagttttgcacgcgggcagccgcattt
ccttatgtgacggtcgataccgagttcctgcgcgaacgcacctactattccaaactgtgc
ctgatccagcttgcctttgcgggggatggcaaagatgatgcggtgctggttgatccgctg
gcggacgggctgtcgcttgacccgctttatgccctttttgcagatcacggcgttgtcaaa
gtgttccacgccgcgcgtcaagatcttgaaattttctatgtggacaaaggcgttatcccc
gaacctctgtttgacacccaggtcgcggcgatggtctgcggttttggtgaacaggtcgga
tacgagaccctggtgcgcaagatcgtgcgcgaacaggtcgataaatcctcgcgctttacc
gactggtcacgccgcccgctgactgatgcacaaaaaacctatgcgctggccgatgtgacc
cacctgcgcggcgtttacgaatttctcgccgcggaactggccaagtcggggcgccacaaa
tgggtcgccgaggaaatggcgatcctgaatgcgcctgaaacatatcgggccgatcccgat
cgggcgtgggaacgggtcaagacgcgcaccaattcgggcaagtttctggcgattgtgcgt
gaattggcgcggtttcgcgagttttacgcacaatcgcgcgatgtgccgcgcacgcgggtg
ttcaaggacgatgcgttggtcgaactggcttcgaccaaaccggccagtgaacaggatttg
ggccgctcgcgcctgttgctgcgcgaggcccggcgcggcgagatcgcagaggggattctg
gctgccgtgcaggccgggatcaacacccgccccgaagatatgcccaaccccgacagatca
cgtgaaaagctgcaggtgaaccccgctttggcggacctgttgcgcgtgttgctgaaagcc
aaggccgaaggcgagggggtcgcgcaaaagctgatcgccaatgcttctgatcttgatctg
atcgcggcggggcagcgcgatgtcgcagccctgaaaggctggcgcaaagaggtgtttggc
gaggatgcgctgcgcctgtgtgatggcaaggtggcgctggccgccaagggcggcaatgtg
atcgccgtcaatctggattag
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