Oryctolagus cuniculus (rabbit): 100340779
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Entry
100340779 CDS
T03373
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100340779
09123 Folding, sorting and degradation
03018 RNA degradation
100340779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100340779
03041 Spliceosome [BR:
ocu03041
]
100340779
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100340779
mRNA cycle factors
Stress granule specific factors
100340779
Spliceosome [BR:
ocu03041
]
Complex C
Other components
Complex C specific factors
100340779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
100340779
NCBI-ProteinID:
XP_051678186
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All DBs
Position
17:complement(79515652..79517857)
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AA seq
632 aa
AA seq
DB search
MNPSAPGYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDRITRRSLGYAYVNFQ
QPADAERALDTLNFDVIKGKPVRIMWSQRDPSLLRSGVGNIFIKNLDRSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKVNGMLLNDRKVFVGRFKSRKERE
AELRARAKEFTNLYIKNFGEDMDDERLKDLFGQFGPALSVKVMTNESGKSKGFGFVSFER
HEDAQKAMDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMRQDRLTRYQGVNLYVKN
LDDGIDDARLRKEFSPFGTITSAKVMTEGRRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMHRVASVRAVPNPVISPYQPAPTSGYFMAAIPQTQDRT
AYYSSSQIAQLRPSPRWSAQGARSFQNMPAAVFPATSRPPFMRAVSAQVPRVVSTQRAAN
TSTQTMGPRPAAAAAAATPVRPVPQYKYAPGVRNLQQHLLNAQPQVTIQQPAVHVQVQEH
LTASMLASALPQEQKQMLGEQLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLH
SKVDEAVAVLHVHQAKEAAQKAVSSATGVQIV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccggctaccccatggcctcgctgtacgtcggggacctgcacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctcgatc
cgggtctgcagggacaggatcacccgccgctccttgggctatgcctacgtgaacttccag
cagccggcggacgcggagcgagctttggacaccttgaatttcgacgtgatcaagggcaaa
ccggtacgcattatgtggtctcagcgtgatccgtcccttctccgaagtggagtaggcaac
atattcattaagaatttggacagatccattgacaacaaagccctgtatgatacattttct
gcttttggtaacatcctttcgtgtaaggtggtttgtgatgaaaatgggtctaaaggctat
ggatttgtgcattttgagacgcaggaagctgctgaaagagctattgaaaaagtgaacggg
atgcttctaaatgaccgcaaagtgttcgttggacgatttaagtctcgtaaagagcgagaa
gcagagctccgagccagggcaaaagagttcaccaatctttacatcaagaattttggggaa
gatatggatgatgagcgccttaaggatctctttggccagtttggacctgccttaagtgtc
aaagtaatgaccaatgaaagtggcaaatccaaaggatttgggtttgtcagctttgaaagg
catgaagacgcgcagaaggcgatggatgagatgaatggaaaggagctcaatggaaagcaa
atttacgttggacgagctcagaaaaaggtggaacgccagacggaacttaagcgcaaattt
gagcagatgaggcaagataggctcaccagataccagggagttaacctttatgtgaaaaat
cttgacgacggtattgacgatgcacgtctccggaaagagttctccccatttggtaccatc
actagcgcgaaggttatgacggaggggcgtcgcagcaaagggtttggttttgtgtgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaacggtagaattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaggagcgccaggctcacctcactaac
cagtatatgcacagggtggcaagtgtacgggctgtgcccaacccggtgatcagcccttac
cagccagcacctacttcaggttacttcatggcagctatcccacagactcaggaccgtact
gcatactattcttctagccaaattgctcaactaagacccagccctcgctggagtgctcag
ggtgccaggtctttccaaaatatgccagctgctgtcttcccagccacttctagaccacca
tttatgagagcagtgtctgcacaggttccacgagtcgtgtccacacagcgtgccgctaac
acatcaacacagacaatgggtccacgtcctgcagcggctgctgctgcagccactcctgtc
cgcccagttccacagtacaaatatgctccaggagttcgcaatcttcaacaacatcttctt
aatgcacagccacaggttaccatacaacagcctgctgttcacgtacaagttcaggaacat
ttaactgcttccatgttggcatctgctctccctcaagagcaaaagcaaatgttgggtgaa
cagctgtttcctcttattcaagccatgcaccctactcttgctggcaaaatcaccggcatg
ttgttggaaattgataattcggaacttcttcatatgcttgagtctccagagtctctccat
tctaaagtggatgaagctgtggctgtactgcatgtccaccaggctaaagaggctgcccag
aaggcagtgagcagtgccactggtgttcaaattgtttag
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