Oryctolagus cuniculus (rabbit): 100350164
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Entry
100350164 CDS
T03373
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03013
Nucleocytoplasmic transport
ocu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100350164
09122 Translation
03013 Nucleocytoplasmic transport
100350164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100350164
03041 Spliceosome [BR:
ocu03041
]
100350164
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100350164
Spliceosome [BR:
ocu03041
]
Complex C
Other components
EJC/TREX
100350164
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100350164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
100350164
NCBI-ProteinID:
XP_002713492
Ensembl:
ENSOCUG00000011601
UniProt:
G1T1L7
LinkDB
All DBs
Position
9:complement(53951625..54009551)
Genome browser
AA seq
657 aa
AA seq
DB search
MSPTPPLFSLPEARTRFTKSTREALNNKNIKPLLSTFGQLPGSENEKKCTLDQAFRGVLE
EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDAKPTRVVRKRTAPE
DFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIEIFANKLGEQWKILAPYLEMKDSEIR
QIECDSEDVKMRARQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacgccgccgctcttcagtttgcccgaagcgcggacgcggtttacgaaatct
accagagaggccttgaacaacaaaaatatcaagccattgttgagtacttttggccagtta
cctggaagtgaaaatgaaaaaaaatgtacccttgaccaggctttcagaggtgttcttgaa
gaagaaattataaatcattcgtcatgtgaaaacgttttagctattatttctcttgctatt
gggggagtaactgaaggtatttgcactgcatctacaccttttgtattattgggagatgtt
ttggattgtcttcctttggatcaatgtgacacaatattcacttttgtggaaaaaaatgtt
gctacttggaaatcaaatacattttattccgctgggaaaaactatctactgcgtatgtgc
aatgatctcctaagaagattatctaaatcgcagaatacggtcttctgtggacgaattcaa
ctctttttggccaggctttttcctctatctgagaaatcaggtcttaacctgcagagtcag
tttaacctggaaaatgtcactgttttcaataccaatgaacaggaaagcaccctgggtcag
aagcacacagaggatagagaagaaggaatggatgtagaagaaggtgaaatgggagatgat
gaagctccaacaacttgctccatcccaattgattacaacctgtatcgaaaattctggtca
cttcaggattacttcaggaaccccgtgcaatgctatgagaagatttcatggaaaactttt
cttaagtattctgaagaagttttagcagtttttaaaagttataaattagatgatactcag
gcctcaaggaaaaagatggaagaattgaaaacaggaggagaacatgtatattttgcaaaa
tttttaacaagtgaaaagttgatggatttacagctgagtgacagtaactttcgtcggcac
atcctgttgcagtatctcattttattccaatatctcaaggggcaggtcaaattcaaaagt
tcaaactatgttttaactgatgagcaatcactctggattgaagatactacaaaatcagtc
tatcaactactatctgaaaacccccctgatggagaaagattttcaaagatggtagagcat
atattaaacactgaagaaaactggaactcatggaaaaatgaaggctgcccaagttttgtg
aaagaaagaacatcagatgccaagcccacaagagtagtaaggaagagaacagctccagag
gacttcctagggaaaggacccaacaagaaaattcttatgggaaatgaggaattaacaagg
ctttggaatctctgtcctgataatatggaagcctgtaaatctgagacaagggaatacatg
ccaactttggaggaattctttgaagaagccattgagcaagcagaccctgaaaacatggtt
gaaaatgagtacaaggctgtgaacaattcaaattacggttggagagccctgagactgtta
gcgcgaagaagccctcatttcttccagccaaccaaccagcagtttaaaagtttgccagaa
tatcttgagaacatggtaataaagctagccaaggaattgccacctccttctgaagaaata
aaaacaggtgaagatgaagatgaggaagataatgatgctttactgaaggaaaatgaaagt
cctgatgttcggcgagacaaacctgtaacaggggaacaaatagagatatttgccaacaag
ctcggtgaacaatggaagattctggctccctacttggaaatgaaagactcagaaattagg
cagattgagtgtgacagtgaagatgtgaagatgagagctaggcagctcctagttgcctgg
caagatcaagagggagtgcatgcaacaccagagaatctgattaacgctctgaacaagtct
ggattaagtgaccttgcagaaagtctaactaatgacaatgagacaaatagttag
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