Oryctolagus cuniculus (rabbit): 127482716
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Entry
127482716 CDS
T03373
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03013
Nucleocytoplasmic transport
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127482716
03015 mRNA surveillance pathway
127482716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
127482716
Enzymes [BR:
ocu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127482716
5.6.2.5 RNA 5'-3' helicase
127482716
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127482716
mRNA cycle factors
Common to processing body (P body) and stress granule
127482716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127482716
NCBI-ProteinID:
XP_051685520
LinkDB
All DBs
Position
Unknown
AA seq
1052 aa
AA seq
DB search
MGPVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFC
NGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVV
VLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKL
EELWKENPAATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQT
QDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVLIWLRDMRLMQGDEICLRYKGDLAPLW
KGIGHVIKVPDNADLTQRPDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSA
LKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRP
LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA
KSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAEREL
LMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQL
GPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVT
AADRVKKGFDFQWPQPDKPMFFYVSQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAK
PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE
HQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNL
RESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQI
GMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKAGRGGRQKSRFG
LPGPSQSNLASSQASQDAASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggggcctgtggacgacagcgtggccaagaccagccagctgctggccgagctcaacttc
gaggaggatgaggaggacacctactacaccaaggacctgccggtccacgcctgcagctac
tgcggcatccacgaccccgcctgcgtggtctactgcaacaccagcaagaagtggttctgc
aacgggcgcggcaacacttccggcagccacatcgtgaaccacctggtgcgggccaagtgc
aaggaggtgacgctgcacaaagacgggccgctgggcgagacggtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctgggcttcatccccgccaaggccgactcggtggtg
gtgctgctgtgcaggcagccctgcgccagccagagcagcctcaaggacatcaactgggac
agctcacagtggcagccgctgatccaggaccgctgcttcctgtcctggctggtgaagatc
ccctcggagcaggagcagctgcgcgcgcgccagatcaccgcccagcagatcaacaagctg
gaggagctgtggaaggagaacccggcggccacgctggaggacctggagaagccgggcgtg
gacgaggagccgcagcacgtgctgctgcgctacgaggacgcctaccagtaccagaacatc
ttcgggccgctcgtcaagctggaggccgactacgacaagaagctgaaggagtcgcagacg
caggacaacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcctacttc
actttgcccaagactgactctggtaatgaggatttagtcctaatttggttaagagacatg
cggctcatgcagggcgacgagatctgcctgcgctacaagggcgacctggcgccgctctgg
aagggcatcggccacgtcatcaaggtcccggataacgcggacttgactcagcgcccagac
tacggcgacgagatcgccatcgagctgcgcagcagtgtgggcgcgcccgtggaggtgacg
cacaacttccaggtggacttcgtgtggaagtccacgtccttcgacaggatgcagagcgcg
ctcaagacgttcgccgtggacgagacgtcggtgtccggctacatctaccacaagctgctg
ggccacgaggtggaagacgtgatcatcaagtgccagctgcccaagcgcttcacggcgcag
gggctgcccgacctcaatcactctcaggtgtacgccgtgaagactgtgctgcagaggccg
ctcagcctcatccagggcccccccggcacgggcaagacggtcacgtcggccaccatcgtc
taccacctggctcggcagggcaacgggcccgtgctcgtgtgcgccccgagcaacatcgcc
gtggaccagctgaccgagaagatccaccagacggggctgaaggtcgtgcgcctgtgcgcc
aagagccgcgaggccatcgactcgcccgtgtccttcctggccctgcacaaccagatccgg
aacatggacagcatgccggagctgcagaagctgcagcagctcaaggacgagaccggggag
ctgtcgtccgccgacgagaagcgctaccgcgccctcaagcgcacggccgagcgcgagctg
ctcatgaacgctgacgtcatctgctgcacctgcgtgggcgcgggggaccccaggctcgcc
aagatgcagttccgctccatcctgatcgacgagagcacgcaggccaccgagcccgagtgc
atggtgcccgtggtcctgggggccaagcagctgatcctggtgggcgaccactgccagctg
ggccccgtggtgatgtgcaagaaggcggccaaggcggggctgtcgcagtcgctgttcgag
cgcctggtggtgctgggcatccggcccatccgcctgcaggtgcagtaccgcatgcacccg
gcgctcagcgccttcccctccaacatcttctacgagggctcgctgcagaacggcgtcacc
gcagccgaccgggtcaagaagggcttcgacttccagtggccgcagcccgacaagcccatg
ttcttctacgtgagccagggccaggaggagatcgccagctcgggcacctcgtacctgaac
cggacggaggcggccaacgtggagaagatcaccacgaagctgctgaaggcgggcgccaag
ccggaccagatcggcatcatcacgccctacgagggccagcgctcctacctggtgcagtac
atgcagttcagcggctcgctgcacaccaagctctaccaggaggtggagatcgccagcgtg
gacgccttccagggccgcgagaaggacttcatcatcctgtcgtgcgtgcgcgccaacgag
caccagggcatcggcttcctcaacgacccgcgccgcctcaacgtggccctcacccgggcc
aggtacggcgtcatcatcgtgggcaaccccaaggcgctgtcgaagcagccgctgtggaac
cacctgctcaactactacaaggagcagaaggtgctggtggaggggccgctcaacaacctg
cgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaacaccatcaacccgggc
gcccgctttatgaccacagccatgtacgacgcccgcgaggccatcatcccgggctccgtg
tacgaccgcagcagccagggccggccctccaacatgtacttccagacgcacgaccagatc
ggcatgatcagcgcagggcccagccacgtggccgccatgaacatcccgatccccttcaac
ctggtcatgccgcccatgccaccacccggctacttcggacaggccaacgggccggccgca
ggccgcggcaccccgaaaggcaaggccggccgcgggggccgccagaagagccgcttcggg
ctgcccgggccgagccagagcaacctggccagcagccaggcgagccaggacgccgcctcg
cagcccttctcgcagggcgcgctcacgcagggctacatctccatgagccagccctcgcag
atgagccagcccggcctctcgcagccggagctgtcgcaggacagctacctcggggatgag
tttaaatcacagatcgacgtggcgctgtcgcaggactccacctaccagggggagcgcgcg
taccagcacggcggggtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
