Oceanirhabdus sp. W0125-5: OW730_03895
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Entry
OW730_03895 CDS
T08747
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocw
Oceanirhabdus sp. W0125-5
Pathway
ocw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OW730_03895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocw03400
]
OW730_03895 (mfd)
Enzymes [BR:
ocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OW730_03895 (mfd)
DNA repair and recombination proteins [BR:
ocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OW730_03895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
WBW97930
LinkDB
All DBs
Position
803031..806537
Genome browser
AA seq
1168 aa
AA seq
DB search
MRLKGIIDPLLKKDKFISLIDNIRKGETPVEISGISDSAKSYVVSAMYNEVEKPFLILSY
SDMEARNIYEDLLFHYDNVEYFPSKEVVFYNIDAISGDLRWRRINVLKNVLSKKNNIVVT
SIEAVMSKYTPIDTFKRYIRKVSIGDIVDAKKTALWLIEAGYERVVTVENKGQFSIRGGI
IDIYPPTEEYPFRVELFDDEIDSIRTFNTKTQRSIEKVFTFMIYPAKESVLPKEDLEKGI
LRIKEDFELFKNKFKKNKDVIESINSTIGKNLESLEEKGTCDNIESYISYFFKETSEIYD
YFDGYNVIVDDVNRCIGKLESVFIEFNENFETYFTRGNILSKQGDLLYDLEHVKDEIKYR
CKVVFNPLSIENKFLNIKSEYNIEQKTLHHYHGQLDLLIDDLNKKKSNGDSIIILSGTKS
RGERLIEILKDKGIEAVYKDKIKELIKGQIVVTYGNQLNGIEFPELSLCIISDKTVFGES
KRKTKKHSKKGMGKIKSFTDLKLGDYVVHVNHGIGVYKGIKQLEVKGHKKDYLMITYTNS
DLLYVPVEQLDMIQKYIGAEGKSPKINKLGGSEWVKAKRKVRKSIMDIADDLLKLYASRS
LIKGYIYNEDTPWQKQFEDEFPYEETGDQLIAIEEIKKDMESEKPMDRLLCGDVGYGKTE
VAIRAAFKAVMNGKQVAFLVPTTILAKQHYSNFTQRFAGYPINIDMICRFRTPTQQKQTL
TALKEGNVDIIIGTHKLIQKDVRFKDLGLLIVDEEQRFGVTHKEKIKNLKKNIDVLTLTA
TPIPRTLHMSLSGIRDISVIETPPEDRYPVQTYVVEFNEQLVRDAIIREIGRDGQVYFVY
NRVESIKEMTAYLKELIPEARIVIAHGQMTERELEKVMLDFMDKKYDILVSTTIIETGID
IKNVNTMIIYDADKMGLSQLYQLRGRVGRSNKVAYSYFTYRKDKLLSEVAEKRLKAIKEF
TELGSGFKIAMRDLEIRGAGNLMGSSQHGHMSVVGYDLYCRMLEETIAKLKGDIDDEPIE
TVIDMKIDAYIPESYISDETQKIEIYKKIAAIENEIDMEETIIELEDRFSNIPKPLFNLI
QISSLRFLCKSIGVVELKEVKNEMLFEFKNNKFFTPKVFTKLMEKYKNKINFKVNAEAPT
IAFKFSQDNKNNLIEELKDFILYLKDIK
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
ttgagattaaaagggatcatagatccccttttaaaaaaagataaatttatatctttaata
gataatataagaaaaggggaaactcctgttgaaataagtggaattagtgactctgcaaaa
agttatgtagttagtgctatgtataatgaggttgaaaagccttttttaattttaagttat
agtgatatggaagctagaaatatatatgaagatcttttatttcattatgataatgtagag
tattttcctagtaaagaagtagttttttataatattgatgctatttctggagacttaaga
tggagaagaataaatgttttaaagaatgtattaagcaaaaaaaataatattgttgttact
tctatagaggcggtaatgagtaaatatacacctatagatacttttaaaagatatattaga
aaagtatctataggtgatattgtagatgcaaaaaaaactgccttatggcttatagaagca
ggttatgagcgggtagttactgtagaaaacaaaggacaattctccataagaggagggata
attgatatttatccacctacagaagaatatccatttagagttgagttgtttgatgatgag
attgattccattagaacatttaatacaaaaactcaaagaagtatagaaaaggtatttacc
tttatgatctatccagcaaaagaaagtgtgttgcctaaagaggatttggaaaaaggaatt
ttaagaataaaagaagattttgaattattcaaaaataaatttaaaaaaaataaggatgta
atagaaagcataaattcaaccataggcaaaaatcttgaaagcttagaggaaaaaggtact
tgcgataatattgaaagttacatctcatactttttcaaggaaacttctgaaatctatgat
tactttgatggttataatgtaatagtagatgatgtgaatagatgtattggtaaattagaa
agtgtatttattgaatttaatgaaaactttgaaacttattttactaggggtaatattctt
tctaaacagggagatcttctatatgatttagagcatgtgaaagatgaaattaaatataga
tgtaaagtagtttttaatccattgagcatagaaaataaatttttaaatattaaaagcgaa
tataacatagagcaaaagacattgcatcactaccatggacaacttgatttgttaatagat
gacttaaataaaaagaaatctaatggagactcaataataatattatctggaacgaaatca
agaggagaacgattaattgagattcttaaagataagggaattgaggcagtttataaagat
aaaattaaagaattgattaaaggtcagattgtagtaacatatggaaatcaacttaatggt
atagaatttcctgaattatcattgtgtataatatcagataaaactgtttttggtgaatca
aagagaaagacaaaaaaacatagtaaaaaaggtatgggcaagataaaaagtttcacagat
ttgaaacttggagattatgttgttcatgttaatcatggtattggtgtttataaagggata
aagcaattagaggttaagggacataaaaaagattatcttatgataacatatacaaatagc
gatcttttatatgtaccagtagaacagttagatatgattcaaaagtatattggagcagaa
ggaaagagtcctaaaattaataaattaggcggaagcgagtgggtaaaggcaaaaaggaaa
gttcgtaagtctataatggatattgctgatgatcttttgaaattatatgcatcaagaagt
ttaattaaaggatacatatataacgaagataccccatggcaaaagcaattcgaggacgaa
tttccatatgaagaaacaggggatcaattaatagctattgaagagattaaaaaggatatg
gaatcagaaaaaccaatggatagacttctttgtggagatgttggatatggtaaaacagag
gttgctattagggctgcatttaaagctgttatgaatggcaagcaagtagcattcttggtg
cctacaactatactagcaaagcaacattatagtaattttacacagaggtttgcgggatat
ccaattaacattgatatgatttgtagatttagaactccaactcaacagaaacaaactttg
acagctcttaaagaaggaaatgttgatataattattggaactcataagttgattcaaaag
gatgttcgttttaaggatttaggattattgattgttgatgaggagcagaggtttggtgtt
actcacaaagaaaaaataaaaaatttaaaaaagaatattgatgtgcttacattaacagca
acacctataccaaggactcttcatatgtccttaagtggtattagagatataagcgttata
gaaacaccaccggaagatagatatcctgttcaaacatatgttgttgagtttaatgaacaa
ctggttagagatgctataattagagagattggacgagatgggcaagtatattttgtttat
aacagggtagaaagtattaaagaaatgacagcttatttaaaggagcttataccggaagcg
agaattgttattgctcatggacaaatgactgaaagagaattagaaaaagtcatgcttgat
ttcatggataaaaaatatgatatattggtgagtacaactattatagagactggtattgat
attaagaatgttaatactatgataatatatgatgctgataagatggggttatctcaactg
tatcaattacgaggaagagttgggaggtctaataaagtagcatattcctattttacttat
aggaaagataagctattaagtgaagttgcagaaaagagattaaaagcaataaaagaattc
actgaattaggttcagggtttaagatagcaatgagggacttagaaataagaggagcagga
aatcttatgggttcgtcacaacatggacacatgtctgtggtaggatatgacttgtattgt
agaatgttagaagagactattgctaagcttaaaggcgatatagatgatgagcctattgaa
acagttatagatatgaaaattgatgcatatattccagagagttatattagcgatgaaact
caaaagattgaaatttataagaagattgctgcaatagaaaatgagattgatatggaagaa
actataattgagctagaagatagattctcaaatatacctaaaccattatttaatcttatt
cagatttcttcattgagatttttatgcaaatctattggagtggttgaattaaaagaagtg
aaaaatgaaatgctatttgaatttaagaataataagttttttacccctaaggtatttacg
aagttaatggagaaatataaaaataaaattaacttcaaagtaaatgctgaggcacctact
attgcatttaagttttcgcaagataataaaaataatcttattgaggaattgaaagacttt
attttatatcttaaagatataaaatag
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