Oryx dammah (scimitar-horned oryx): 120872208 Help Entry 120872208         CDS       T07255                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism oda  Oryx dammah (scimitar-horned oryx) Pathway oda03030   DNA replication oda03410   Base excision repair oda03420   Nucleotide excision repair oda03430   Mismatch repair Brite KEGG Orthology (KO) [BR:oda00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     120872208 (LIG1)    03410 Base excision repair     120872208 (LIG1)    03420 Nucleotide excision repair     120872208 (LIG1)    03430 Mismatch repair     120872208 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:oda03032]     120872208 (LIG1)    03400 DNA repair and recombination proteins [BR:oda03400]     120872208 (LIG1) Enzymes [BR:oda01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      120872208 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      120872208 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      120872208 (LIG1) DNA replication proteins [BR:oda03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     120872208 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      120872208 (LIG1) DNA repair and recombination proteins [BR:oda03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      120872208 (LIG1)    NER (nucleotide excision repair)     Other NER factors      120872208 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      120872208 (LIG1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR Motif Other DBs NCBI-GeneID:  120872208 NCBI-ProteinID:  XP_040108345 LinkDB All DBs Position Unknown AA seq 916 aa AA seqDB search MQRSIRSFFQPKKEGKVKKPEKETSNSIRETESPPKVALKERNRVVSDGDSPVKRPGRKA TRVLGSEGEEEEEEAPTTPRSQKPASDSPQPSPPSPVTLPESSPSRSSPSPAAASPLGIP KRRTARKQLPKRTFQDVLKEQGEDEDPETKKKKEEGEAETPTESLPEPEGGDKEEVEDGD QPMTPPEPQTSTESPTESISEPGVTVKQEPQEDGQAQPPPKAPKTLSSFFSPRKPAVKKE AKEEGPGSLRKDETKGYLDPPSYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVS ARLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATG RQLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTASGVFAKFRDIAQLAGSASTTKK MDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQGCPPAVVDA GKGKTAEARKTWLEEQGLILKQTFCEVPDLDRIIPVLLEHGLERLPEHCRLSPGVPLKPM LAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIIS RIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVEAAEIQVQVCLYAFDLI YLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLM VKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASY DEESEEFQAICKLGTGFSDEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVWE VKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQI QNQQGAEPDSEQEEFY NT seq 2751 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagtatcaggtcatttttccagcccaagaaagagggcaaagtgaagaagcca gagaaggagacatccaacagcatcagagaaacggagtcccctccgaaggtggcactgaag gagcggaatcgagtggtgtctgacggtgactctccagtgaagaggccagggaggaaggca acccgggtcctgggcagcgagggcgaggaggaggaagaggaagcccccaccacccccaga agccagaagcctgcttcagactctccacagccctcacctcccagtcctgtcacactgcct gagagcagcccttcccgctccagcccctccccagcggctgcatccccattagggatcccg aagcgtcgcacggcccggaagcagcttcccaaacggacatttcaagatgtcctgaaagag cagggtgaggacgaggacccagagactaagaagaagaaggaggaaggagaagcagagaca ccaacagaaagcctcccagagcctgaagggggcgacaaggaggaagtggaagacggggac cagcccatgacgccccctgagccccagacctccacagagtccccgacagaaagcatttca gagcccggggtgacggtgaagcaggaaccacaggaggatggccaggctcaaccgcccccc aaagctccaaagaccctcagcagtttcttctccccccggaagccagctgtcaaaaaagaa gcgaaagaagaaggacctggttctctgagaaaggatgagaccaagggatacctggaccca ccgagctacaatcctgccaagaacaactaccaccccatcgaggatgcctgctggaaggcg ggccagagggttccttatctggctgtggcccgggcgttcgagaagatcgaggaggtctct gctcggctccggatggtggagacgctgagcaacctgctgcgctccgtggtggccctgtca cctgcagacctcctacccgtcctctacctgagcctcaaccgcctggggccaccccagcag ggcctggagctcggcatcggagagggcatcctcctcaaggcggtggcccaggccacaggt cggcagctggagtctgtccgggccgaggtggccgagaagggtgatgtggggctggtggcc gagagcagccgcagcacccagaggctcgtgctgcccccacccgcgctcaccgcctccggc gtcttcgccaagttccgggacatcgcacagctggcgggcagtgcttccaccaccaagaag atggatgtcatcaaaggcctctttgtggcctgccgtcactcagaggcacgtttcattgct agagccctgagtggacgactgcgcctcgggctggctgagcagtcggtgctggcggccctc gcccaggccgtgagcctcacgccccccggtcaaggatgcccccccgccgtggtggacgcc gggaagggcaagacggcagaagctagaaagacgtggctggaggagcaaggcctgatcctg aagcagaccttctgtgaggtgcctgacctggaccggatcatccccgtgctgctggaacac ggcctggagcggctcccggagcactgcaggctgagcccaggggttcccctgaaaccaatg ttggcccaccccacccggggtgtcagcgaggtcctgaagcgctttgaggaggcagctttc acctgcgaatacaaatacgacgggcagagggcacagattcacgttctggaaggcggggag gtgaagatcttcagcaggaatcaggaggacaatactggaaggtaccctgacatcatcagc cgtatccccaagattaaactcccatcagtcacatccttcatcctagacacagaagctgta gcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgc aaggaggtggaggcggcggagatccaggtgcaggtgtgtctgtatgccttcgatctcatc tacctcaacggagagtccctggtacgtgaacccctctcccgacgccggcagctgctccgg gagaacttcgtggagacggagggagagttcgtctttgccacctccctggacaccaaggac acagagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgaggggctgatg gtgaagactctggacgtggacgccacctatgagattgccaagaggtcacacaactggctc aagctgaagaaggactacctggagggtgtgggcgacaccctggacctcgtagtgattggt gcctacctgggcaaggggaagcgggccggccggtacggaggcttcctgctggcctcgtac gatgaggagagcgaggagttccaggccatctgcaagctcggaactggcttcagtgacgag gagctggaagagcaccaccagaggctccaggccttagtgctgcccaccccgcgttcctat gtccgggctgacggcgcggtggcccccgaccactggctggaccccagcgatgtgtgggag gtgaagtgtgcagacctctccctgtcccccatctaccctgcggcccggggcctggtggac agcgagaaagggatctccctccgcttcccccggtttattcgtgtccgtgaggacaagaag ccggagcaggccactactagtgcccaggtggccggtctgtacaagaagcagagtcagatt cagaaccagcagggtgctgagccggactccgagcaggaagagttctactag

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