Orrella dioscoreae: ODI_R3517
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Entry
ODI_R3517 CDS
T05133
Name
(GenBank) FIG006045: Sigma factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
odi
Orrella dioscoreae
Pathway
odi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
odi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ODI_R3517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
odi03021
]
ODI_R3517
Transcription machinery [BR:
odi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ODI_R3517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_28
HTH_Tnp_4
HTH_38
GerE
HTH_29
HTH_24
TnsD
Motif
Other DBs
NCBI-ProteinID:
SOE51544
UniProt:
A0A1C3JWE3
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All DBs
Position
I:3819985..3820497
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AA seq
170 aa
AA seq
DB search
MPPLSSAPAIEALYADHHGWLRGWLRKRLGDAADAADLTHDTYVRILVTGRTPSEADSRC
HLARIANGLVVDLHRRRRIEAAYLDAVSLLPAAHAPSEEDRALAIEALVELDTILHGLAP
KARAALLLCKLEGLGYREIAVRLNVSLSSVEKYIATALRACYQALYDARG
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgctctcttccgcgcctgccatcgaagcgctttatgccgatcatcatggctgg
cttcgcgggtggctgcgcaagcgcctgggcgacgcggcggacgcggcggacctgacgcac
gatacctacgtgcgcatcctggtcaccggccgcacgccgtcggaggcggactcccgctgc
cacctggcgcgcatcgcgaacggcctggtggtggatctccatcgccgccgccgcatcgaa
gccgcctatctggatgccgtgagcctgctgccggccgcgcatgccccgtcggaggaagac
cgtgcgctggccatcgaggcgctggtggagctcgacacgatcctgcatggcctggcgccc
aaggcgcgtgccgccctgctgctgtgcaagctggaaggcttgggctatcgcgagatcgcc
gtccggctgaacgtgtcgctctcgtcggtggagaaatacatcgccaccgccctgcgtgcc
tgctatcaggcgctgtatgacgcccgcggctga
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