KEGG   Ostrea edulis (European flat oyster): 125647928
Entry
125647928         CDS       T09123                                 
Name
(RefSeq) DNA ligase 3-like
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    125647928
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oed03400]
    125647928
Enzymes [BR:oed01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     125647928
DNA repair and recombination proteins [BR:oed03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     125647928
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N zf-PARP LIG3_BRCT DNA_ligase_A_C zf-CCHH RNA_ligase BRCT_2 mRNA_cap_enzyme FMP23 Mif2_N
Other DBs
NCBI-GeneID: 125647928
NCBI-ProteinID: XP_048730759
LinkDB
Position
1:63471846..63505525
AA seq 1002 aa
MKLRILRQIRFVAVKQLDLLYAPQKILSATSRSVVLNVQALNALPVSHRCHSFHSSPLRL
MAENRYVTGYAKLGTSSCKKCKQKIDKGALRIGKVVSNPFSDEGGDMKQWFHPQCMFETL
KRARATTKKIEEPDDLEGFTEIEQSDKDLINKLIKEFVVQSSSKSPGSAKKKAVGNVQSP
LPFSPIKSKPKVEHDDEAGPSTSDMPSAGGHRDESFREFRRLCAEIAEKSSYLAKTKLVH
DFINKGSSGEGFKGDLYLWLKCLLPGVVKQVYNLNSKQLVKLFSQIFGTNQDDMIADLDQ
GDVAETVRLYFDMSKVLPPQKKSTLSLQQVDDYLSELTKVTKEDDQQRILTKVAKRCTGN
DLKMFVRLVKHDLRINSGAKHILDALDDNAYAAFQASRDLRDVVDRVLENKEGVPGMKKK
LSVKASLMTPVLPMLAEACRSVDYALKKCPSGFYAEIKYDGERVQLHKKGNQFQYFSRSL
KPVLPHKVQHFKEYIPKAFPTGDDLILDAEVLLVDNKTSKPLPFGTLGVHKKAAFKDASV
CLFVFDCLHINGENIMHKPIKERKKILESEMTEIPNRIMFSEAQLINVADDLQTLMTKVF
KQGLEGLVLKDVNSTYKPGKRHWLKIKKDYLEHGTMADSADLVVLGAYFGTGNKGGIMSI
FLLGVYDPSSGQWCTVTKCHSGLDDQTLEELQTSLDMVKISKNSDKVPDWLNVKKQVVPD
FVTRDPKKSPVWEISGAEFSKADIHTAGGISIRFPRITKFRDDKNWQNATDLPRLKILYE
KSKETSDIIPSTSKRTPRKKSNDDEDNDNNNEGDDSGTDLNSDDEMYVSTVKKTSVHGEA
TPTKSTPQKATPTKTTPLKATPVKNGIKRQHNDGENSEATPSKKSKPECKYGADCYQSNP
KHLDQFHHPPKTLPNVFRGCKIYLPKDTKLYKTLRRYIIGWDGELVPEYDIASATHVITP
AGHKGGVVKCAGVCVTLNWIEMCIKKKMLIRTDPYIVGDDDE
NT seq 3009 nt   +upstreamnt  +downstreamnt
atgaaattaaggatacttcgacagatacgttttgtagcagtgaagcaactagatctactg
tatgctccacagaaaattctgtctgcgacttcacgaagtgtcgtcttaaatgtccaggca
ctaaatgccctaccagtgtctcacagatgtcatagttttcactcctctccactgagactc
atggcagaaaatcgatatgtcactggctatgccaaacttggaacatcaagttgtaagaaa
tgtaaacagaagattgacaagggagcgcttcgcattggaaaggtggtgtcaaatcctttc
tctgatgaaggtggtgacatgaaacaatggttccacccacagtgcatgtttgaaaccctg
aaaagagcacgagcaacaactaaaaagatcgaggaacctgatgacctggaagggttcaca
gaaattgaacagtctgataaagacctcatcaacaaattaatcaaagaattcgtggtacaa
tccagcagcaagtccccaggctctgctaagaaaaaagcagtgggcaatgtacaatctccg
ctccctttcagtcccataaaatctaaaccaaaagtagagcacgacgatgaagctggaccc
tccaccagtgacatgccatctgctggaggccatcgtgacgagtcattccgggagtttcga
cgactctgtgctgagattgctgaaaagagttcctacctcgcaaaaacaaaacttgttcat
gatttcatcaacaaaggttcctctggagagggatttaaaggagacctgtacttgtggctg
aagtgtttgttacctggagtcgtgaaacaggtgtacaacctcaacagtaaacagctcgtt
aaactatttagccagatatttggtacaaaccaggatgacatgattgcggatttggaccag
ggtgatgtagcagaaactgtgcggctgtactttgatatgagtaaagtattaccacctcaa
aagaaaagcacactttcccttcaacaggttgatgactatctcagtgagttaacaaaagta
accaaggaggatgatcaacaaaggattcttaccaaagttgctaaaaggtgtacaggcaat
gatttgaaaatgtttgtaaggcttgtcaagcatgatctcagaataaattcaggagctaag
cacatattagatgctctagatgacaatgcctatgctgccttccaagcctccagagacttg
agggatgtggtagacagagtacttgagaacaaggaaggggtgccagggatgaagaagaag
ctcagtgtcaaagcctccctcatgactcccgttctaccaatgctggctgaggcttgcagg
tctgttgactatgccctgaagaagtgccccagtggtttctatgcagagattaagtacgat
ggtgagagagtccagctacacaagaaaggaaaccagtttcagtatttcagcagaagctta
aaaccagtcctaccacataaagttcagcacttcaaggagtatatcccaaaggctttcccc
acaggtgatgacctcattctagatgcagaagtgttattggtggacaacaaaaccagtaaa
ccactcccattcggaactctgggagttcacaagaaagctgcattcaaagatgccagtgtc
tgcttattcgtatttgattgtcttcatatcaatggggaaaatataatgcacaaaccaata
aaggagagaaagaaaattctggagtcggagatgactgaaattccaaatcgaatcatgttt
tctgaggcacagctgatcaatgttgcagatgatcttcaaacactgatgacaaaagttttc
aagcagggtttagaaggacttgttttgaaagatgtcaatagtacttataaaccgggaaaa
cggcattggttgaaaataaagaaggactacttggagcacggaacaatggctgattctgct
gacctggtggtattaggggcttactttggcacgggtaacaaaggtggaataatgtccata
tttctgttgggagtgtatgatcccagcagtggtcagtggtgcacggtaaccaaatgtcac
agtgggctggacgatcaaactctagaggaacttcagacatccctggatatggtcaaaatc
agcaagaattcagacaaggtaccagattggttgaatgttaagaagcaggttgtaccagac
tttgtaacaagggaccccaaaaagtccccagtgtgggagatatctggtgccgagttcagc
aaggctgatatccacacggcgggtggaatctccatcaggtttcccagaattactaaattt
agagatgacaaaaattggcagaatgccacagatttaccaagattaaaaattctatatgaa
aaatcgaaagaaacatctgacatcattcccagcaccagtaaaaggactccaaggaagaaa
tcaaatgatgatgaagacaatgataacaacaatgaaggagatgacagcgggacagacttg
aacagtgatgatgagatgtatgtatctactgtgaaaaagacatctgtacatggagaagcc
acgcctactaaatccacaccccagaaagccacgcctacaaaaaccacacccctaaaggcc
acacctgtcaaaaatggcataaagaggcagcacaatgatggtgaaaatagtgaagccaca
ccatcaaaaaagtccaaaccagaatgcaaatatggagctgattgttatcaatccaaccca
aaacatttagatcagtttcatcatccaccaaagactcttccaaatgtatttagaggctgc
aaaatatacctgcccaaagacaccaaactttacaagacattaagaagatatatcattggc
tgggatggggaattggtacccgagtatgatatagcatcagccactcatgtcatcacacca
gcgggacacaagggaggtgttgttaagtgtgcaggagtgtgtgtgaccttgaattggatt
gaaatgtgtataaagaagaaaatgttgataaggactgatccctatattgttggtgatgat
gatgagtaa

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