Ostrea edulis (European flat oyster): 125649312
Help
Entry
125649312 CDS
T09123
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03013
Nucleocytoplasmic transport
oed03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125649312
03015 mRNA surveillance pathway
125649312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125649312
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125649312
5.6.2.5 RNA 5'-3' helicase
125649312
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125649312
mRNA cycle factors
Common to processing body (P body) and stress granule
125649312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
Viral_helicase1
UvrD-helicase
nSTAND3
AAA_16
ATPase
SRP54
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
125649312
NCBI-ProteinID:
XP_048732712
LinkDB
All DBs
Position
5:complement(27437555..27461488)
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVDAYAPNSQSLTFLETEEDLIGADTQGTDYDYTDFTLPSQTQSQTQASQLEHGQSQSQ
VNGSEAPIQNGLDKGVASIAQGVGELNFEEEEEEQFMMKDLPKHACSYCGIHDPASVVFC
NSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGFI
PAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQEQMRSRQI
SAQQINKLEELWKDNPEATLEDLEKPGVDEEPTQVLLRYDDAYQYQNIFGPLVKLEADYD
KKLKESQTQDNIVVRWDVGLNKKRIAYFHLPKANDEMKLMHGDELRLRYQGELHKPWSGV
GHVIKIPDNHSDEVAIELKSNAGVPTECTHNFVVDFVWKSTSFDRMQAALKTFAVDETSV
WGYIYHKLLGHEVEDVVIKCQLPKRFSVPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLAKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMESVPELQKLQQLKDETGELSSTDEKRYRSLKKQCEKELLQHADVICCTC
VGTGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPGDRTRKGLDI
PWPQGDKPMFFYTTSGQEEISSSGTSYLNRTEAANVEKIATRFLRSNVKPEQIGIITPYE
GQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPR
RLNVALTRARYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESMIQFSKPR
KLVNTSNPGGRFMSNIMFDAREVMIPGSVYDRNRGYNEPVVRTHDQLSYIGPERHYTGPA
LNIPVPVNMFMPPMPQPFNGQQMPMGNRSAPANRGSGRRRGQKPPRYSNTQSQQSNSQYS
QGNSQSQASQDVSQPFSQGPLTQGPMSMSQPFQMSQPGLSGLSQPELSQDSFLADDFKSQ
ADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcgtatgccccaaattcccaatccttgactttcctcgagaccgaggag
gatctcattggggccgacactcaaggaaccgattatgactatacggatttcaccttacca
tcccagacccaatcacagacccaagcttctcaacttgagcatggacaaagtcaaagtcag
gtgaatggctcagaggctcccattcaaaatggactggataaaggagtggcatcgattgca
cagggggtgggggagctcaattttgaggaggaggaggaagaacagtttatgatgaaagat
ctccccaagcatgcatgctcgtactgcggaatccatgacccggcatcggtagtgttctgt
aacagcaccaagaaatggttttgtaatgggagaggcaacacttctggaagtcacatcatt
aaccatcttgtaagagcaaaggcgaaggaagtgactctgcataaagatggccccctggga
gagactgtccttgagtgctataactgtggttgtaggaatgtcttcctgttgggcttcatt
cctgccaaggccgactctgtagtggttctcctctgtcgccagccctgtgccacgctaacc
aatctgaaggacatgaactgggaccccagtcagtggcagcccctgatacaggacaggcag
tttctgtcatggcttgttaaggttccatcagatcaggaacagatgaggagtcgacagatc
tcagctcagcagatcaacaagctggaggagttgtggaaggacaacccagaggccacgctg
gaggatctagaaaagccaggggtggatgaagaacctacccaagtgttgttaagatatgac
gatgcctaccagtaccagaacatatttggaccgctggtaaagttggaggctgactatgac
aaaaaactgaaggaatcgcagactcaggataacattgtagtacgctgggatgtgggcctg
aacaagaagaggatcgcatatttccatctgccaaaggctaatgatgagatgaagttgatg
catggagatgagttgagacttcgttaccagggtgaactgcacaagccgtggtcaggagtg
ggacatgtcattaaaattcccgacaaccacagtgatgaagttgccattgaattgaaaagc
aatgcaggagtgcccactgaatgcacccacaactttgtggtggattttgtgtggaagtcc
acctcatttgacaggatgcaggcagccttgaagacttttgctgtggatgaaacttctgta
tggggttacatctatcacaagcttctgggacatgaagtggaggatgttgtaattaagtgt
cagctacccaagagattcagtgtccctaaccttcccgagcttaaccactcccaggtgtac
gcagtcaagactgtccttcagcgacctctaagtctaattcagggtcccccaggaactggt
aagactgtgacctcggctaccattgtgtatcacctggctaaacagaacaacggacaagta
ctggtctgtgctccctccaacattgcagtggaccaactgactgagaagattcacaaaaca
ggattgaaggtggtacgtttatgtgctaagagcagagaagctattgattcaccggtgtcc
ttcctagcactacacaatcagatcagaaatatggaaagtgtccccgagttacaaaagctg
cagcagctgaaggacgagacaggagaattgtcctccactgacgagaaaagatacaggtct
ctcaagaagcagtgtgaaaaggagctgttacagcatgcggacgtgatctgttgtacatgt
gtgggaactggagaccccaggctggcaaagatgcagtttagatcagtgctgattgacgag
agcacacaagccaccgagcccgagtgcatgatccctgtagtgctcgggtgtagacagttg
attctagtgggtgaccattgccagctgggaccagtggtgatgtgtaagaaggcagcccgt
gctggtctgtcgcagtccctgtttgaacggttggtggtgttgggtatcagacccattcgt
ctacaggtccagtacagaatgcaccctgctcttagtgcttttccatccaacatcttctat
gaagggtctttacaaaatggagttgctccaggagaccgcacaaggaaaggacttgacatt
ccttggcctcaaggtgacaagcctatgtttttctacacaacatctggacaagaggaaatt
tcaagttctggaacttcttacttgaataggactgaggctgcgaatgttgaaaagattgca
acaaggtttttgagatccaatgtcaagccagagcaaattggcatcatcacaccatacgaa
ggacagagggcttacattgtacaatacatgcagtacagtggatctctgaacaagaaattg
tatcaggagattgaggttgctagcgtggatgccttccaaggaagagagaaagatttcatt
attttgtcctgcgtccgttccaacgaacatcaaggaattggctttctgaatgaccctaga
cgtcttaatgtggctttaactcgagcaaggtatggaataataattgttggaaatcccaag
gttctatcaaagcaacccctgtggaaccacctgttaacttactacaaggagcagaaatgc
ttagtggagggcccactgaacaatttgaaggaaagcatgattcagttcagtaagccgcgc
aaactggtcaacacatccaaccctggagggcgatttatgagcaacatcatgtttgatgcc
agggaggtgatgatcccggggagtgtgtatgacagaaatcgaggttacaatgagcctgtg
gttcgcacacatgatcagctgagttacattggtccggagagacattacactggtcctgcc
ttgaacatcccagtcccagtcaatatgtttatgccacccatgccacagccattcaatgga
cagcaaatgccaatgggtaacagaagcgctccagctaacagggggagtgggcgtcgccgg
ggacagaagcctcctcgctacagtaacacgcagtcgcagcagagtaactcacagtacagt
cagggcaacagtcagagccaggctagtcaggatgtatcccagccattctcccagggaccg
ctgacacagggccccatgtcaatgagtcagcccttccagatgagccagccgggattgtct
ggtctctcccagccagaactctctcaggacagtttcttggcagatgacttcaaatctcaa
gcagatggcatgctgtcccaagactccacctaccagggtgaccgcatgttctatgcatca
cagttgtcacagggtccatttaattag
DBGET
integrated database retrieval system
