Ostrea edulis (European flat oyster): 125663593
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Entry
125663593 CDS
T09123
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03022
Basal transcription factors
oed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125663593
09124 Replication and repair
03420 Nucleotide excision repair
125663593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125663593
03400 DNA repair and recombination proteins [BR:
oed03400
]
125663593
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125663593
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125663593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
MukF_M
Motif
Other DBs
NCBI-GeneID:
125663593
NCBI-ProteinID:
XP_048751826
LinkDB
All DBs
Position
1:complement(19572510..19589752)
Genome browser
AA seq
399 aa
AA seq
DB search
MAEEEEKGYRWETEYERTWEAIQEDEKGSLQASVDDIISKAKRRKLLEKISNVRLGMMRH
LFLIIDMSEAMNDQDLKPTRLLSTLKLLEYFVEEYFDQNPISQLGIITTKNKRAEKISEL
GGNPRRHITTLQSLVNKTCQGEPSLQNTLELAHQTLRHMPGHASREVLVILGSLTTCDPD
NIFSTVSMLRDGNVRCSVIGLAAEVCVCKKLCKETHGSYNVILDEGHFKDLLTQHVTPPP
ATANTESSLIRMGFPHHQLNADKEERPSICMCHLDSKNGQGFSSTGYFCPQCKSKYCELP
IECKACGLTLVSAPHLARSYHHLFPLDQFREIPTAQMGSNVICFSCQSTVQELNVYICDN
CQQIFCLDCDLFIHETLHSCPGCASSRQTQQLAKMAGFS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagaggaagaaaagggttatagatgggagacagaatatgaacgcacatgggag
gctattcaagaggatgagaaaggctcactgcaggcaagtgtggatgacatcatcagcaaa
gccaagaggagaaaactcctggagaaaatcagcaatgtcagacttggaatgatgagacat
ttatttctcatcattgacatgtcagaagccatgaatgaccaagatctgaaacccactcgt
ctactgtcaacattgaaactcttggagtattttgttgaagagtattttgatcaaaaccca
attagtcagctgggcatcattacaacaaagaacaaaagagcagaaaaaatatcagagtta
gggggaaatcccagaagacatataacaactttacagagccttgtcaataaaacttgtcag
ggggaaccatctttacagaacactttagaactggcccatcagactctcagacacatgccc
ggacatgctagcagggaggttctagtgatcttgggcagtctcacaacgtgtgatcccgat
aacatatttagcacagtttctatgctcagagatggaaatgtcaggtgttctgtcattggt
ctggcagctgaagtgtgtgtctgtaaaaagttatgcaaggaaacacatggcagctacaat
gtcattttggatgaaggtcacttcaaggatcttctcacacagcatgtcactccaccacct
gctacagccaatacagaatcatcactcattagaatgggtttccctcatcatcagttaaat
gcagataaagaggagagaccgtccatctgtatgtgtcatcttgacagtaagaatggccaa
ggcttcagtagtactgggtacttttgtcctcagtgtaaaagtaaatactgcgaactgcca
atagaatgcaaagcctgtggcctgaccctggtgtcagcccctcacctagctcgttcatat
catcatctgtttccattggatcagttccgtgaaatccctacagctcagatgggatcaaac
gtaatatgtttttcatgtcaatcaaccgttcaagaacttaatgtgtatatttgtgacaat
tgtcaacagattttctgtttggattgtgatttatttattcacgagacattacattcctgt
ccaggatgtgcaagctcaaggcaaacgcaacagctggccaaaatggcgggattttcttga
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