Ostrea edulis (European flat oyster): 125669996
Help
Entry
125669996 CDS
T09123
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125669996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oed03041
]
125669996
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125669996
Spliceosome [BR:
oed03041
]
Complex A
U2 snRNP components
U2 related factors
125669996
Complex B
125669996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
125669996
NCBI-ProteinID:
XP_056017177
LinkDB
All DBs
Position
4:complement(31153882..31179453)
Genome browser
AA seq
993 aa
AA seq
DB search
MPREGRSYRRRSRSRSDSRERDRKRRSRSRSRPRRSRSRDRSRRSRSRERKRSHSRERRR
SRSRDRRRSRSRDRRRSKRSRSRNRKKSRSKTPDKKKRSISPEAKKLTHREGEISVKDEP
LDKEEEQKRLEMEMQKRRERIEQWRAERKKKQELIPINIAPVSKKWSLEDEDDDDEEEVE
VKKEDDGNEVDPLDAYMQDIISEVKQKDKEKPNGDGVQSMGKVTIITAVAKKKVNPEKEK
GELMENNVDLMEYSSEEEEEDLESTMLNMNKKKKDAIVVNHDKIYYASFRKNFYVEVPEI
ARMTNEEVENYRVELEGVKVRGKNCPKPLKSWAQCGCSKKVMDVFKKNNFEKPTPIQCQA
IPTIMSGRDLIGIAKTGSGKTLAFLIPLFRHIMDQPPLDENDGPIAIIMTPTRELAMQIT
SECKKFTKPLGLKAVCVYGGTGISEQIAELKRGCEIIVCTPGRMIDMLSANSGRVTNLRR
CTYVVLDEADRMFDMGFEPQVTKIMDSIRPDRQTVMFSATFPRQMEALARKILQKPIEVQ
VGGRSVVCKDVDQNVIVIDEDKKFLKLLELLGIYQERGSVLIFVDKQEHADELMKELMTH
SYPCMSLHGGIDQYDRDSTIVDFKNGNIRLLVATSVAARGLDVKHLILVINYDCPNHYED
YVHRCGRTGRAGNKGYAFTFITPEQERYSGDIIKALELSGAPVNVDLEKLWNDYKERAKA
EGRTVKRSSGFSGKGFKFDETEAQLANERKKLQKAALGLQDSDDEDTGVDIDQQIEDMFA
SVKRVTDIAKPQVIANPTTGASTLPTGQSNQQKLALAKQLAAKINMAKKIGPDARDITQQ
AAKFILSDEGFAPKVASKTIAEQTAEKINAKLGYRPPSEDEDGENSNAETFKRYEEELEI
NDFPQTARWKVTSKEALAQICEYSEAGITVRGTYFPPNKEPKEGERKLYLAIEATSDMAI
QKAKKEITRLIKDELIRLQNSYQPINKGRYKVL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgccgagagaaggaagatcatacagacgaagatcacggtccaggagtgattcacgtgag
cgggacaggaagagacgaagtcgatccaggagtcgacccagaagatctcgatctcgagat
agatcacgaagatccaggtccagagagaggaagcgatctcattctcgtgaaaggagaagg
tcaagatctagagatagaagaaggtcacgatctagggacaggagaaggtcaaagagatca
aggtcaaggaacaggaaaaagtccagatccaaaactccagacaagaaaaaacgaagtata
tctccggaggcaaagaaattgacacatcgtgagggggagatcagtgtcaaggatgagccc
ctggacaaggaagaagaacagaaaaggttggagatggagatgcagaaacgcagggagaga
atagaacagtggcgggctgaacggaagaaaaaacaggaactgattcctatcaacattgct
ccggtcagtaaaaagtggtcactggaagatgaagatgatgatgatgaggaagaagttgaa
gtaaagaaagaggatgatggcaatgaagtggacccactggatgcctacatgcaggacatt
atatcagaggtgaaacagaaagacaaagaaaaaccaaatggagacggagttcagagcatg
ggaaaggtcacaatcatcacagcggtggccaagaaaaaggtcaatcctgagaaggagaag
ggagagttgatggagaacaacgtagacctgatggagtattcctcagaagaagaggaggag
gacctggaatctacaatgctgaatatgaataaaaagaaaaaggatgctatagtggtaaac
catgacaagatttattatgcttcgttcaggaagaacttttatgtagaggtgccggagatt
gccaggatgaccaatgaggaggtggagaactatcgagtggaactggaaggagtcaaagtc
cgtggcaagaactgtccaaagcccctcaagtcctgggctcagtgtggctgcagcaagaaa
gtcatggacgtcttcaaaaaaaacaactttgagaagcctactccgattcagtgccaggca
atcccgaccatcatgtcaggcagggaccttatagggatagctaagacagggagtgggaaa
accctggccttccttatcccactgttccgacacattatggatcaacccccactggatgaa
aacgatggaccaatcgccattataatgaccccaacaagagaactggccatgcagataaca
tcggagtgcaagaagttcactaaaccactgggactgaaggctgtgtgtgtgtacggcgga
accgggatatcggagcaaatcgccgagttaaaacgtggctgtgagatcatcgtgtgtacc
cctgggaggatgattgacatgctgtctgctaacagtggtcgggtgacaaacttacgaaga
tgcacttatgtagtgttggatgaggctgacagaatgtttgacatgggatttgaaccacag
gtgacaaagatcatggacagcatacggccagatagacagacagtgatgttttctgccacc
tttccacgtcagatggaggctctcgcccgaaagatcttacagaagccaatcgaagttcag
gtcggaggtcgcagtgtggtctgcaaggacgttgaccagaatgtgattgttatagatgag
gataagaaatttctgaagctgttggagttactcgggatttaccaggagaggggcagtgtg
ctgatctttgtggacaagcaagagcacgcggacgagttaatgaaggagctgatgactcac
tcctacccgtgtatgtcgcttcacggtggcatcgaccaatacgaccgagacagcaccatc
gtcgacttcaagaacggcaacatccggctactggtggctacgtctgtggctgcccggggt
cttgatgttaaacacctgattcttgtcattaactacgactgtcccaatcactacgaggac
tacgtgcatagatgcggacggacaggtcgagcaggaaacaaaggttatgccttcactttt
ataactccggaacaggagaggtattcaggggacatcatcaaggccctggaattgtctggt
gctcctgtgaatgtggatctggaaaaattgtggaatgactacaaggagagagccaaggct
gagggtagaactgttaaacgttccagcggtttctctgggaaagggttcaaatttgacgag
acggaggcacagctggccaatgagaggaagaagttacaaaaggcagccctcggactccag
gactcggatgatgaagatactggtgtcgacattgaccaacagattgaggacatgtttgcc
agtgtgaagagagtgaccgacattgcgaagccacaggtcattgcaaacccaaccacaggg
gcaagtacactacccaccggccagtctaaccaacagaagctggctctagccaaacagctc
gcagccaaaatcaacatggccaagaaaatcggtcctgatgcaagggacatcactcagcag
gctgctaagtttattttatctgatgaaggttttgctccaaaagttgcttctaagacaata
gcagagcaaacagcggagaagattaatgccaagctgggatatcgacctccatcggaggat
gaggacggagaaaacagcaatgcggagaccttcaaacgttacgaggaggagctggaaatt
aatgacttcccacaaacagctaggtggaaagtcacatcgaaggaggccttggcacagatt
tgtgagtactccgaggccggtatcacggtgagggggacttacttccccccaaacaaggag
cccaaggagggagagagaaagctgtatctagctatagaggccacgagcgacatggccatt
cagaaagccaagaaagaaatcacgcgcctcatcaaggatgagcttatacgattgcaaaat
tcataccaaccaatcaacaagggaagatacaaagtgctgtaa
DBGET
integrated database retrieval system
