Ostrea edulis (European flat oyster): 125670209
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Entry
125670209 CDS
T09123
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03013
Nucleocytoplasmic transport
oed03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125670209
09122 Translation
03013 Nucleocytoplasmic transport
125670209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125670209
03041 Spliceosome [BR:
oed03041
]
125670209
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125670209
Spliceosome [BR:
oed03041
]
Complex C
Other components
EJC/TREX
125670209
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125670209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
125670209
NCBI-ProteinID:
XP_048761208
LinkDB
All DBs
Position
4:complement(5018801..5041753)
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AA seq
663 aa
AA seq
DB search
MAASMKFVFGNARDAFTKKLDSWEGSHDLKEIFQSISGSESEKKLAVDQALRDVIKEAIE
KTDDCEAYKKVIIQSIDLANDDLCSVIMPFLLLSDVFDLIPLSQCEIVFYVVEENLPVWK
SALFYDAGKNFLLRMCNDLLRRLSKSQNTVFCGRIQLFLSRLFPLSEKSALNLMSQFNLE
NVTIYSTKSDEIKLKVREVADDVMEVEEGEMEDLSGSTPIDYNLYRRFWALQDYFRKPSQ
CYEKVPWKAFQQNADVVLNAFASSKLDDMKSSRRKLDLPRPADTKAFFAKYLTSEKLMDL
QLNDSNFRRYVLVQFLIIFQYLSSQVKFKSPSQTLTDDQSQWVRTTQDKVYQLIRETPPD
GEKFCKTVQHILGREEHWNKWKNEGCPDFARKPELDEKKVKSRAKRRWVGDDLQAQGGKI
IKMGSAELTRLWNLNPDNLEACKAEKRVFLPSLEDFFSEAMEQADPEAQFEEQYKMVNNP
VFQWKSLRLLARRSPHFFGHNNTPAMPLPQYLELMLNKIAQELPSTDTNGEVAQEPSNEE
MRTELGEDEAIKEAQDGEEEELKEQAEEQGREDMPEDILSKEQIDLIAEKLGGDWKKLGT
ELNFPEDDMTYFESENSEETACAKKMLTIWQENESERATMGTLKIALKEVGLTEVIDAVF
GSS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccatgaagtttgtttttggaaatgcaagagatgcttttaccaagaaactt
gattcttgggaaggcagtcatgatttgaaagaaatatttcagtcaatcagtggaagtgaa
tcagaaaaaaagctcgctgttgatcaagctcttcgcgatgttataaaggaagctattgaa
aagacagatgattgtgaagcatacaaaaaagtgattatacagtccatagacctggcaaat
gatgacctgtgttcggtgatcatgccttttctccttctatctgatgtttttgaccttatt
cctctgagtcagtgtgagattgtgttttatgtagtggaggaaaatctacccgtgtggaaa
tcggcattgttttatgatgcagggaaaaacttcctcttaagaatgtgcaatgatctactg
agaagattaagtaaatcacagaatactgtgttctgtggcagaattcagctgtttctctct
agactgtttccactctcagaaaaatcagccctgaatctcatgagtcagttcaacctagaa
aatgtcacaatttactctacaaagtcagatgaaatcaagcttaaagtgcgtgaggttgct
gacgatgttatggaggttgaagaaggagaaatggaggatctatcggggtcaacccctata
gattacaacttgtataggaggttctgggcacttcaggattactttagaaaaccgtctcag
tgctatgaaaaagttccatggaaagcatttcaacagaatgctgatgtggtactgaatgca
tttgccagttctaaattggatgacatgaaatcttcgagaaggaaacttgatttacctcgc
ccagcagatacaaaagccttctttgccaagtatttgacgagtgaaaagttgatggacttg
caactgaatgatagtaacttcaggagatatgtacttgttcagttcctcattattttccag
tatttgagttcacaagttaaattcaagagtcccagtcaaactctaacagatgaccaaagt
cagtgggtcagaacaactcaggataaagtataccagcttatcagggaaactcctccagat
ggggaaaagttctgtaaaacagttcagcacatcttaggacgagaggaacattggaataaa
tggaaaaatgagggatgtcccgactttgcaagaaaaccagaactagatgaaaaaaaggtc
aagtccagagctaagagacggtgggtaggagatgacctacaagctcaaggaggaaaaatt
attaaaatggggagtgctgaactcactcgattatggaatttgaatcctgataacttagag
gcttgcaaagcagagaaaagggtatttttaccttcgcttgaggactttttctcagaggcc
atggaacaagcagaccctgaggcccaatttgaagagcaatacaaaatggtaaataatcct
gtgttccagtggaagtctctacgacttctggccagacgaagtccgcatttctttggtcac
aataacaccccagccatgccacttcctcagtacttagaactcatgcttaacaaaatagca
caagagctaccctccactgacactaatggagaagtagcacaggaaccaagcaatgaggaa
atgaggacagagcttggtgaggatgaggctataaaagaggcacaagatggtgaggaggag
gaactgaaagagcaggcagaagaacaaggtcgagaggatatgccagaagatattctttca
aaggaacagatagacctcattgctgagaaactgggtggggactggaaaaagctgggcaca
gagctaaactttcctgaggatgatatgacttattttgagagtgaaaacagtgaagaaact
gcatgtgcgaaaaagatgttgacaatttggcaggaaaatgaaagtgagagagcaacaatg
ggcacattgaagattgccctgaaggaagtggggctgacagaagtgatcgatgctgtgttt
ggatcctcttga
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