Ostrea edulis (European flat oyster): 125673639
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Entry
125673639 CDS
T09123
Name
(RefSeq) cleavage stimulation factor subunit 2 tau variant-like
KO
K14407
cleavage stimulation factor subunit 2
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125673639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125673639
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125673639
U7-dependent histone pre-mRNA processing factors
125673639
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_occluded
RRM_7
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
125673639
NCBI-ProteinID:
XP_048766239
LinkDB
All DBs
Position
3:48908760..48924663
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AA seq
419 aa
AA seq
DB search
MMHMQNDPNAPITSAERAARSVFVGNIPYETTEEQLREIFSAAGPVVSFRLVYDRETGKP
KGYGFCEYQDVETAQSAMRNLNNYDFNGRPLRVGVAAGEQNRDEMKGLQQALGGPIMESP
YGDPVEPEKAPEAISKAVASLPPEQMFELMKQMKLCIQNNPTEARNMLLQNPQLAYALLQ
AQIVMKIVDPQVAMAMLHRDTKQIPPASVPSSVPSSIPLSIPQGQPVSAPGPMPGPPGQV
PVGPGPRMVGQNPMNPNMPGPDMMGPRGPMMRPNMGLPGGPVPNMGMPSQPAQLSQVPGQ
PQIGGPGVRPEIRDPRMMGEPRMMGDPRAMGPRPGMPMPATSQPGPIPRLPTGLLGPGGL
TGGLPNLSGGAQISPQDQEKAALIMQVLQLTDQQIAMLPPEQRQSILILKEQISKSAAQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacatgcaaaatgatccaaatgcgccgattacttcagcagaaagagcagcaaga
tcagtatttgttgggaatattccttatgagacaacagaggaacaactgagggaaatattt
tctgcagctggaccagttgtgagttttaggttagtgtatgacagggagacagggaaaccg
aagggctatggtttctgtgaatatcaggatgtggagacggcccagagtgctatgcggaac
ttgaacaattatgattttaatggccgcccactgagagtgggcgtggctgccggggaacag
aacagggatgagatgaagggactacaacaagccctggggggccctataatggagagtcct
tatggagaccctgtggagcctgaaaaagcaccagaagccatttctaaagcagtggccagt
cttcccccagagcagatgtttgaacttatgaagcagatgaagctgtgtatccagaacaac
ccaacagaggccagaaacatgctgctgcagaacccacagctggcgtacgcgctgctgcag
gctcagatcgtgatgaaaattgtagacccgcaagtcgccatggccatgttgcacagagac
actaaacagatccccccagccagtgtgcccagtagtgttcccagctccatccctctcagt
attccccagggacaaccagtttcagctccaggaccaatgccaggtcccccaggtcaggtg
ccagttggtccaggacccagaatggtgggacagaatccaatgaatccgaacatgcctggt
cccgacatgatgggacctcggggtccaatgatgcgtccaaatatgggcctacccggagga
ccagtacctaatatgggcatgcctagtcaaccagcacaactgtcacaggtgccaggacag
ccacagatagggggaccgggtgtaaggcccgagattcgggaccccagaatgatgggggag
ccacgtatgatgggagaccctcgagccatgggtcctcgtccgggaatgcccatgcctgcc
acttcacagcctggtcctatacccagactgcctacaggacttttaggacctggtggtctg
acaggaggcctccctaacttgtcaggaggggctcagatatccccacaggatcaggaaaag
gcggccctgattatgcaggtgttacagttgactgatcaacagattgctatgttgcctccg
gagcaaagacaaagtattcttatcctcaaagagcagatctccaaaagtgctgctcaatga
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