Oerskovia sp. KBS0722: FFI11_018785
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Entry
FFI11_018785 CDS
T06124
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oek
Oerskovia sp. KBS0722
Pathway
oek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFI11_018785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oek03400
]
FFI11_018785 (mfd)
Enzymes [BR:
oek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFI11_018785 (mfd)
DNA repair and recombination proteins [BR:
oek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FFI11_018785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
UB2H
AroM
Motif
Other DBs
NCBI-ProteinID:
QDW64279
LinkDB
All DBs
Position
complement(4210435..4214133)
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AA seq
1232 aa
AA seq
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MNLTGILPALLADPTARAVVEHVRLRGAVDVVGPVGVRPPLLAAMAGATATGDAAGAAKG
APAQGSRPLVVVTATGREADELAASVRAYLPDELGDLVAVLPAWETLPHERLSPRSDTVA
KRLAVFRRLAHPTSEISQSGPVRVLVMPVRALLQPVVEGLGDLEPVELSTGETADLTDVA
ERLSAAAYQRVDMVERRGEFAVRGGILDVFPPTEDHPLRVEFWGDEVTEIRWFAVADQRS
LEIADHGVWAPPCREILLTDAVRARAAELIETLPGATDMLDKLAAGIAVEGMESLAPVLV
DRMLPVLELVPDDALLVINDPERVRRRAHDLVATTEEFLAAAWTGAAAGGSTPINLSAAS
FETFADVHDVAERRGLGWWTLSPFGLDEGATPDGESHPGEALPGGEGPTSGRGTDGVTTF
TVPARNVESYRGDVERALDDLRSLQHAGWRLVLTTEGHGPARRMTEQLSAVDTAARLVAS
IDTEPEGGVVLVTPAPVGPGFVAPELKLAVFSESDLTGRQGSSTRDMRKMPSRRRNVVDP
LALRAGDYVVHEQHGVGKFVELVQRTLGTGGNAATREYLVIEYASSKRGQPGDRLFVPSD
QLDQVTKYTGGESPSLNKMGGSDWAKTKSQARKHVKEIAGELIRLYSARMATQGHAFGPD
TPWQRELEDAFAYVETPDQLVTIDEVKADMEKAVPMDRLVCGDVGYGKTEIAVRAAFKAV
QDGKQVAVLVPTTLLVQQHFQTFAERYSAFPVTVKALSRFQTEAESKETVEGLKDGSVDV
VIGTHRIISGAIKFKDLGLVIIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMA
VTGIREMSTLATPPEERHPVLTYVGAYEEKQISASIRRELLREGQVFYVHNKVETIDRTA
QRLRELVPEARIGVAHGKMGEAQLDQTITAFWEKELDVLVCTTIIETGLDISNANTLILE
RADMLGLSQLHQLRGRVGRGRERAYAYFLYPPERPLTDTAHDRLATMAANTDLGAGMQIA
MKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVASFKGEVEEEAPEVSIELPVDAH
IPHDYIAHERLRLEAYRKIAAAQDEPALAEVKAELVDRYGALPEVVEALFAVADFRNHAR
RAGLADVTAQGKFVRFAPVDLPESAELRLKRLYPGTMLKPAIRAFLVPFPTTARIGGRPL
RGMEVLAWARQLIDAVITGDVSAAATVGTSKR
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcaccggaatcctgcccgccctcctggctgacccgaccgcgcgcgcggtcgtc
gagcacgtgcgcctgcggggcgcggtcgacgtcgtcggaccggtgggtgtgcgtccgccg
ttgctggccgcgatggcgggggcgaccgcgaccggggatgctgccggggccgcaaagggc
gcccccgcccagggctcgcgccccctcgtcgtcgtcactgcgacgggccgtgaggccgac
gagctcgccgcgagcgtgcgcgcctacctgcccgacgagctgggcgacctggtcgcggtc
ctgcccgcgtgggagacgctgccgcacgagcggctgtcgccgcgcagcgacacggtcgcc
aagcggctcgcggtgttccgccgtcttgctcacccgaccagcgagatcagccagtcgggc
cccgtgcgcgtcctcgtcatgccggtgcgcgcgctgctccagccggtcgtcgagggcctg
ggtgacctggagcctgtggagctcagcacgggcgagacggccgacctcacggacgtcgcc
gagcgcctgagcgcggccgcctaccagcgcgtggacatggtcgagcggcgcggcgagttc
gcggtgcgcggcggcattctcgacgtcttccccccgaccgaggaccaccccctgcgcgtc
gagttctggggcgacgaggtcaccgagatccgctggttcgcggtcgcggaccagcgcagc
ctcgagatcgcggaccacggcgtgtgggcgccgccgtgccgcgagatcctcctcacggac
gccgtccgcgcccgcgctgcggagctgatcgagacgctcccgggcgcgaccgacatgctc
gacaagctcgccgccggcatcgcggtcgagggcatggagtccctcgccccggtcctcgtg
gaccgcatgctgcccgtcctggagctcgtccccgacgacgccctgctcgtcatcaatgac
cccgagcgcgtgcgccgccgggcgcacgacctcgtcgcgacgaccgaggagttcctcgcc
gccgcctggaccggcgccgccgcaggcggttcgaccccgatcaacctctcggccgcgtcg
ttcgagacgttcgccgacgtccacgacgtcgccgagcgtcgcggcctcgggtggtggacg
ctcagcccgttcggcctcgacgagggcgccacccccgacggcgagtcgcacccgggcgag
gcgctcccgggaggcgagggcccgacgtcgggcaggggcacggacggcgtgaccaccttc
accgttcctgcgcgcaacgtcgagtcctaccgcggcgacgtcgagcgcgcgctcgacgac
ctgcgctcgctccagcacgcgggctggcgcctggtcctgacgaccgagggccacggcccc
gcacgccgcatgaccgagcagctctccgcggtcgacaccgcggcgcgtctggtcgcgtcg
atcgataccgagcccgagggcggcgtcgtgctcgtgacgcccgcgcccgtggggccgggc
ttcgtcgcgccagagctcaagctggcggtcttcagcgagtcggacctcacgggacgccag
gggtcgagcacgcgcgacatgcgcaagatgccctcgcggcggcgcaacgtcgtcgacccc
ctcgcgctgcgcgcgggcgactacgtggtgcacgagcagcacggcgtggggaagttcgtc
gagctcgtgcagcgcacgctcggcacgggcggcaacgccgcgacgcgcgagtacctcgtc
atcgagtacgccagcagcaagcgcggccagccgggcgaccgcctgttcgtgccctccgac
cagctcgaccaggtcaccaagtacacgggcggcgagtcgcccagcctcaacaagatgggt
ggctcggactgggccaagaccaagtcccaggcgcgcaagcacgtcaaggagatcgcgggc
gagctcatccgcctctacagcgcccgcatggccacgcaggggcacgcgttcggccccgac
accccgtggcagcgcgagctcgaggacgcgttcgcgtacgtcgagacgcccgaccagctc
gtcacgatcgacgaggtcaaggccgacatggagaaggccgtccccatggaccggctcgtg
tgcggcgacgtcgggtacggcaagactgagatcgccgtccgggcggcgttcaaggccgtg
caggacggcaagcaggtcgcggtcctcgtgcccacgacgctcctggtccagcagcacttc
cagacattcgccgagcgatactcggcgttccccgtgacggtcaaggcgctctcgcgcttc
cagaccgaggccgagtccaaggagacggtcgaggggctcaaggacggctcggtcgacgtc
gtgatcggcacgcaccgcatcatctccggggccatcaagttcaaggacctgggcctggtc
atcatcgacgaggagcagcggttcggcgtcgagcacaaggagacgctcaagcagctccgg
accaacgtcgacgtgctcgcgatgagcgcgacccccatcccgcgcacgctcgagatggcc
gtcacgggcatccgcgagatgtcgacgctcgcgaccccgcccgaggaacggcaccccgtg
ctcacgtacgtgggcgcgtacgaggagaagcagatctctgcgtcgatccgccgcgagctc
ctgcgcgagggccaggtgttctacgtgcacaacaaggtcgagacgatcgaccggaccgca
cagcgtctgcgcgagctcgtccccgaggcccgcatcggcgtcgcgcacggcaagatgggc
gaggcccagctcgaccagacgatcacggcgttctgggagaaggagctcgacgtcctggtc
tgcaccacgatcatcgagaccggcctcgacatctccaacgccaacaccctcatcctggag
cgcgccgacatgctgggcctgtcccagctgcaccagctccgtggccgcgtgggccgtggg
cgcgagcgcgcgtacgcgtacttcctgtacccgcccgagcgcccgctgaccgacaccgcg
cacgaccgcctcgcgaccatggccgccaacacggacctgggcgcgggcatgcagatcgcc
atgaaggacctcgagatccgcggcgcgggcaatctgctgggcggcgagcagtcggggcac
atcgcgggcgtcgggttcgacctgtacgtacgcatggtcggcgaggccgtggcgtcgttc
aagggcgaggtcgaggaagaagcccccgaggtgtcgatcgagctgcccgtggacgcacac
atcccgcacgactacatcgcgcacgagcgcctgcgcctcgaggcgtaccgcaagatcgcg
gcggcccaggacgagcccgcgctcgccgaggtcaaggccgagctcgtcgaccgttacggc
gcgctgcccgaggtcgtcgaggccctgttcgccgtcgcggacttccgcaaccacgcgcgc
cgcgcggggctcgcggacgtcacggcgcagggcaagttcgtgcgcttcgcgcccgtcgac
ctcccggagtctgcggagctgcgactcaagcgcctctacccgggcaccatgctcaagccc
gcgatccgcgcgttcctcgtgcccttcccgacgacggcgcgcatcggaggccgtccgctg
cggggcatggaggtgctcgcctgggcgcgccagctcatcgatgcggtcatcacgggcgac
gtcagcgcggcggcgacggtggggacgtcgaagcggtag
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