Olea europaea var. sylvestris (wild olive): 111378531
Help
Entry
111378531 CDS
T05244
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111378531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oeu03400
]
111378531
Enzymes [BR:
oeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111378531
DNA repair and recombination proteins [BR:
oeu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111378531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
111378531
NCBI-ProteinID:
XP_022857518
LinkDB
All DBs
Position
Unknown
AA seq
1232 aa
AA seq
DB search
MAETKFSVMVSLFEWMQKSKTSTVKRSKFRKFLSTFCRPNNGEDYFATIRLILPGLDRER
GSYGLREHVLATCLIDALDMSRDSSDSQKLINWRKGGPNSGAFAGNFSRIALEVLERRQG
MTSGGLTIKELNELLDQLASTENRAEKISLLRDLIKKTNAKEMKWIIMIILKDLKLGISE
KSIFQEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQLALRINNTTAA
WKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGHGMSDIIIQNILVDRCI
LDGEMLVWDTSTNRFAEFGSNQEIAKAVKEGLDGDRKLCYVAFDILYVGDTSVIHQSLKE
RHQLLQKVLKPIPGRLEILVPNGGLNSHRPAGEPCWSLIARNVDDIEKFFKETIENRDEG
IVLKDLSSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAE
RPAPNTYPRRFVSFCRVGTGLADEELNTVVTKLKPYFRKYEYPKKAPPSYYEVTNNSKER
PDVWVESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHECLDVQSFIEL
VHSSNGTTQRGSENPTVQDNKLTRTKLLKREKKNVSVVPSHFVQTDVSHVKGETSILSNL
TFYFVNVPSSISVDSLHKMVVENGGTFSMNLNNSVTHCIAAESKGLKFQAAKHQGDVIHY
SWLFDCCSQKKLLPLHPKYFLFLSNSSKKKLEEDIDEFSDSYYWDVNMADFKQLLSNIDW
KEDTKAIVHYKKKYCPEEKWARFHGYCIYFYIPEQFLKNMDWKVLLELAMRRMKIEVSMS
GGIVADNLSHSSHVVIMSFPELNVDFDTLLSSFSLTDRHLLHSRRLHVVGSQWLEDCFEK
DQKLSEDHYSLKPSGFEETTVVVSNKHELDQEDYQSLDNLEKQVTSPYSDEVGEQGTKNS
KKPRVIDLPNRDGKRKRGSPSKTSTNSGRRGAIKPRRTRARYGNKPAKISEIESDKNASS
DEPAIEEESELSGANHGNVQKVPLEGRSIVNQPRRTRARIIHKPAKILENESEGASSDEQ
NIRGNSEVGCTNYGSTEIINRHTPEAKTKEVVKDYESSDKCKKVEPEVAEHGKHETFVDP
VQAMLFNMIPSLATKKTDKADPILEEEKPRGTNPVNVAENAKGSPCILEEEKAESVISEL
EEGSLPSEGNEKPVKKKKVSYKDAANELLKNW
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaacaaaattcagtgtgatggtaagcctattcgaatggatgcagaagagcaaa
acctccaccgtcaaacgctccaaattccgcaagtttctctccaccttctgccgccccaac
aatggcgaggactactttgccaccatccgtctcatccttccaggacttgatcgcgagcgc
ggttcctatggcctccgtgagcacgtcctagctacctgccttattgacgcacttgacatg
tcccgcgactcctccgactctcagaaactcatcaactggcgcaaaggtggccctaactcc
ggtgcctttgctggaaacttctctcgcatagcattagaggtactggagcggaggcagggt
atgacttcaggtggcctcacgataaaagaacttaatgaattgcttgatcaattggcttca
acggaaaatagagccgagaagatttctcttctgcgtgatctgatcaagaaaacaaatgct
aaagaaatgaagtggattattatgataattcttaaagatcttaagttgggaattagtgaa
aagagcatcttccaagaatttcacccagatgcagaggacttgttcaacgtgacatgtgat
ttaaaattagtttgtgagaagttgagagatcgaagtcaacgtcataagcgccaggacatt
gaagttggcaaacctgttcgtcctcaattggctctaaggatcaataatacaacagctgca
tggaaaaagcttcacggcaaggaagttgttgtcgagtgcaaattcgatggtgatcgcatt
caaattcacaaaaatgggacagaaatacatttcttttcgaggaactttcttgatcattcg
gaatatggacatggcatgtcagacattattatacagaatattctggttgacaggtgtatt
cttgacggtgaaatgttggtgtgggacacatctactaatcggtttgcggagtttgggtca
aatcaagaaatagccaaggcagtgaaggagggacttgatggcgatcgaaagttgtgctat
gttgcttttgacattctttacgtaggagacaccagtgttattcaccaaagcttgaaggag
cgacatcagcttcttcagaaagttctcaaaccaataccaggtcgcttggaaattttggtt
ccaaatggtggtcttaactcccatcgccctgctggggaaccgtgttggtcactaattgct
cgcaatgttgatgacattgagaaatttttcaaggaaacgatcgagaacagggatgaagga
attgttttaaaagatcttagctccaaatgggaacctagtgatcgaagtggaaagtggcta
aagttaaagcctgagtatattcgagctggctctgatttagatgttctcattataggaggc
tattatggttctgggcgccgtggaggggaggtagcacaatttcttgttgggcttgcagag
cgtccagccccaaacacatatccaaggcgatttgtttcattttgcagagtgggtacagga
cttgctgatgaggagcttaacactgttgtgaccaaattgaaaccttattttaggaaatat
gagtaccccaaaaaggcaccgccaagctattatgaagtcacaaataactcaaaggagaga
ccagatgtttgggttgaaagcccagagaaatcaatcatactttctatcactagtgatatc
cgaacaattagatctgaggtattttctgctccatacagcttgcgatttccacgcattgat
cgagtgagatatgacaagccttggcacgaatgtcttgatgtgcaatcttttattgaactg
gtacattcaagcaatggtacaactcaaagagggtcagaaaatccaactgtgcaggacaat
aaactgacacgcacgaagttgttaaaacgagaaaagaagaacgtttctgttgttccttct
cactttgttcagactgatgtttctcacgttaagggcgaaacatcaatattatcgaacctg
acattttactttgtaaatgtaccttcatccatttccgttgattccttgcacaaaatggtg
gttgaaaatggtggtactttttcaatgaatttgaataattcggttactcattgtattgca
gctgagagtaaaggtctcaagtttcaggcagctaaacaccaaggagatgttattcattac
tcttggttatttgattgttgttcgcagaagaagcttcttcctttacatccaaagtacttt
ctttttctttccaactcatcaaagaaaaaattggaagaagatattgatgaattttctgat
tcctactactgggatgtcaatatggccgacttcaaacagctcttaagcaacattgactgg
aaggaagatactaaagcaattgttcactacaagaagaagtactgcccagaggagaaatgg
gctcgctttcatggttactgcatttacttctacattccagagcaatttttaaaaaatatg
gattggaaagttctattggaacttgcaatgaggaggatgaagattgaagtttccatgagc
ggtggcattgttgccgacaatctgtctcatagttctcatgtagtaattatgtcttttccg
gaactcaatgtggatttcgatactctgttgagtagtttctcactgacagataggcatcta
ttacatagtagaaggttgcatgttgttggctctcaatggttggaagactgtttcgagaag
gaccagaagttgtcagaggatcattatagcttaaagccctcaggttttgaagagactact
gttgtagtgagtaacaaacacgaacttgaccaagaagactaccaaagcttggataatcta
gaaaagcaggttacatcaccttattctgatgaagttggagaacagggaaccaaaaattcg
aagaagccaagagttattgacttgcctaatagggacggaaaaagaaaaaggggaagtccc
agtaagacaagtactaatagtggaagaagaggtgccattaaacctcggagaacaagggca
cgctatggaaacaagccagctaaaatctctgaaattgaatcagacaagaatgcttcttcg
gatgagccagctattgaggaagagtctgaactcagtggtgcaaatcatgggaacgtacag
aaggtacctttggaagggagatcaattgttaatcagcctcgaagaacaagggcacggatt
atacataagcccgcaaagatcttagaaaacgaatcagaaggggcttcttcagatgaacaa
aatatcagaggaaattctgaagtcggctgcacaaattatgggagtaccgagataataaac
aggcacactccagaagctaaaacgaaagaggtagtaaaagattatgaatcatcagataaa
tgcaaaaaagttgaaccggaagttgcagaacatggtaaacacgaaacttttgtcgatcca
gttcaagcgatgttatttaacatgatacctagccttgcaactaagaaaacagataaagct
gatcccatccttgaagaggagaaaccgcgaggtactaatcctgtcaacgtagccgaaaat
gcaaaaggttctccttgtatcctggaagaggagaaagcagaaagtgtcatttctgaactc
gaagagggaagtttaccttccgaaggaaatgagaagcctgttaagaaaaagaaagtcagc
tacaaggatgctgctaatgaattactcaagaattggtga
DBGET
integrated database retrieval system
