Olea europaea var. sylvestris (wild olive): 111382093
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Entry
111382093 CDS
T05244
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03013
Nucleocytoplasmic transport
oeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111382093
03015 mRNA surveillance pathway
111382093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111382093
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111382093
mRNA cycle factors
P-body specific factors
111382093
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
111382093
NCBI-ProteinID:
XP_022861734
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Position
3:3005054..3014424
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AA seq
503 aa
AA seq
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MKGMLDRTKVVVRHLPPTISRSALIEHVDSGFRGRYRWLSFRQGRSSLKHPSYSRAYIDF
NQPENTIEFAEFFNGHVFVNEKGTQFKTLVEYAPSQRVPKQLSNRDGREGTIFKDPEYLE
FLEFLAKPIENLPSAEIQLERREAERAVLHFILGAPKDIPIVTPLMDYVRQKRAAKIGRR
VLLNGKPARRVTGVLSKSSGSGSSKRGSEKWTSTTMYVLRDSSKSAIGKDKSTNKLVPKR
DDQQLSKMSVSSAAASGTADALDKESEGSRPNVTGKKKILLLKGKEKEIPINQRLETSGR
IIRSILLNRDSRQNQSEYVPQSELQTHTPDQDRDKRPPRPPSLHRKDSSGASGDKVFGND
LQGIHSEKLERRTRNKDRPDHGVQTPVQCSNGSRSSDRSLTSFTSQTFQVKDSTEDFLGT
HADIKHDMLVARGSELRYTGSGRGSHYSVDVVSYRCRGRRGSLHDVKDAGGSSLVESKPL
KRVSSVHGSHEKQVWVQKSCSGS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggatgctagatcgaaccaaggttgtagtgaggcacttgccgccgacgatttct
aggtcagctctcatagagcacgttgattccggcttccgcggccgctatcgatggctctcc
tttcggcaaggcagatcaagcctgaagcatccgtcctattccagagcctacattgacttt
aatcagccagagaatactattgagtttgcagagtttttcaatggccatgtctttgtcaac
gagaaaggcacccagtttaaaacacttgttgagtatgctccttcacagcgtgttccgaag
cagttgtctaatagggatgggcgtgaagggactatatttaaagatcctgaatatttggag
ttccttgaatttcttgcaaagcctatcgagaatcttcccagtgcagaaatacagttggag
aggagggaagcagaacgagctgttcttcattttattttaggtgctccaaaggatattcct
atagttacccctttaatggactatgttcggcagaaaagagctgcaaagattggtcggagg
gtgttgttgaatgggaagccagcaagaagagttactggagtgttatccaagagttctggt
tcaggttcttcaaaacgaggctcagaaaagtggacttctaccaccatgtatgttttgaga
gatagctcgaagtctgcaattgggaaagacaagtcaacgaataaacttgttcctaaacga
gatgatcagcaactctccaagatgtctgtaagttcagctgcagcatctggaactgctgat
gcattggataaggaaagtgaaggctcaagaccaaatgtaactgggaagaagaagatcctg
cttttgaaggggaaagaaaaggaaattcccattaaccagcgacttgaaactagtggaagg
atcatcaggagcattcttctgaatagggatagtcgtcagaatcaatcggaatatgtacct
caatctgaactgcaaacccacaccccagatcaggacagggataagagacctcctcggccc
ccaagtctccatcggaaggattcaagtggagcttctggagataaggtttttggcaatgat
ttgcagggtatccactctgagaagctggaaagacgaacaagaaataaggataggcctgat
catggcgttcagactcctgttcagtgttcaaatggctcacgttctagtgataggtctctt
acatcttttacttcccaaacattccaagtaaaagattccaccgaagattttctaggaact
catgcagatataaagcatgatatgttagttgcacgtggcagtgagttgagatacacagga
agtggtcgtggcagtcattactctgttgacgttgtttcttacaggtgtcgtggtcgccgt
ggatcactgcatgatgtcaaggatgcaggtggctcttcccttgtggagagcaaacccttg
aaaagagtctcttctgtccatggttcccacgagaaacaagtgtgggtccaaaagtcttgt
tctggttcgtag
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