KEGG   Olea europaea var. sylvestris (wild olive): 111393964
Entry
111393964         CDS       T05244                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
oeu  Olea europaea var. sylvestris (wild olive)
Pathway
oeu03030  DNA replication
oeu03410  Base excision repair
oeu03420  Nucleotide excision repair
oeu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oeu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111393964
   03410 Base excision repair
    111393964
   03420 Nucleotide excision repair
    111393964
   03430 Mismatch repair
    111393964
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oeu03032]
    111393964
   03400 DNA repair and recombination proteins [BR:oeu03400]
    111393964
Enzymes [BR:oeu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111393964
    6.5.1.6  DNA ligase (ATP or NAD+)
     111393964
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     111393964
DNA replication proteins [BR:oeu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    111393964
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     111393964
DNA repair and recombination proteins [BR:oeu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     111393964
   NER (nucleotide excision repair)
    Other NER factors
     111393964
   MMR (mismatch excision repair)
    Other MMR factors
     111393964
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Presenilin
Other DBs
NCBI-GeneID: 111393964
NCBI-ProteinID: XP_022875525
LinkDB
Position
4:20176292..20207795
AA seq 837 aa
MFSLRSYSRRVTRISFSRNFTGVFSISFTLNLPKSFSSKPIFLFTQSNPSSKIMSSSRPS
AFDVLMSNASKKKQMSSKTQQQSSPRKRKNPVESSQNPNINPKNNSQNPISDPAENDAKQ
DELSTKDSHSDQIETAHVESLLKNGGKTTLDSTADENSSISQSGKKDKITGPKKSFDSDK
GLKVAKKAKVLISPDESVAELRKKAASFDVKRAAYWGQGERIPFMFVVKAFDAISKESGR
IAITEIVCNMLRTVIETTPDDLVAVVYLLANRIASAHEGLELGIGDASIIKGLAEACGTK
EAHIKKQYKELGDLGLVAKASRSSQPLMRKPEALTVTKVFETFRLIAKESGKDSQEKKKN
HIKALLVAATDCEPQYLIRLLQTKLRIGLAEQTLLVALGHAAVYSEKHSSPPGNVNNPLE
EAAKIVKQVYSVIPVYDKIVPTLLAAGVWNLPKTCNFSPGIPVGPMLAKPTKGVSEIVEK
FHDIEFTCEYKYDGERAQIHYMENGLVEIYSRNAERNTGKFPDVVAAITRLKKPSVTSFV
LDCELVAYDREKQKILPFQVLSTRARKNVVMSEIKVNVCVFAFDILYLNGQQLLQEQLDV
RREHLYKSFDEECSFLQFATAITSNDLEEIQKFLEDSVDSSCEGLIIKTLNKDATYEPSK
RSNNWLKLKKDYMDSIGDSLDLVPIGAFHGRGKRTGVYGAFLLGCYDTSKEEFQSICKIG
TGFSEAMLEERSASLRSKVIPKPKSYYRYSDSITPDVWFEPIEVWEVKSADLTISPVHRA
AIGIVDPDKGISLRFPRLLRVREDKNPEEASSSDMIAEMYTAQKHNQRDNQDENEDD
NT seq 2514 nt   +upstreamnt  +downstreamnt
atgttttcactccgctcctacagccgccgtgtgacacgcatcagtttctcccgtaatttt
accggagtattttcaatctcgttcacgttaaacctcccaaagtccttctcttcgaaaccc
atattcctctttactcagtcaaaccctagctccaaaataatgtcttcctctcggccctca
gcttttgatgtcctcatgtccaatgcttccaagaaaaaacagatgtcatccaaaacccaa
cagcaatcctcccccagaaaacgcaaaaacccagttgaaagttctcaaaatcccaatata
aacccaaagaataattctcaaaatcccatttccgacccagctgaaaatgatgcaaaacaa
gacgaattaagcaccaaagactcacattctgaccaaattgaaactgcccatgttgagagt
ttgttgaagaatggtggaaaaaccactcttgattcaactgcagatgaaaattcttctatt
tcccaaagtggaaaaaaggataaaataacaggtccaaagaaaagttttgattcggataaa
ggcttaaaggtggcaaagaaagccaaggtgttgattagtccagatgagagtgtagcagag
ttgcggaagaaggcagctagttttgatgtgaagagggccgcgtattgggggcagggagag
aggattccatttatgtttgtggtgaaagcttttgacgcaatatcgaaggagtcaggcagg
attgcaatcacggagatcgtgtgtaatatgttaaggactgtaattgagacgacaccagat
gacttggtggcagttgtatacctcctggcgaacaggattgcatctgcacatgaaggtctg
gagcttgggattggggatgcttcaattatcaaggggcttgcagaggcttgtgggactaag
gaagcacacattaagaagcaatacaaggagcttggagatttaggtcttgttgcaaaagca
agccgttcatcacagcctttgatgcgcaaaccagaagcattaactgttaccaaagtgttt
gaaacattccgacttattgctaaggagtctgggaaggatagccaggaaaagaaaaagaat
cacataaaggctttacttgttgcagccactgattgtgaacctcaatatttgatacgccta
ctccagacaaaattgcgcattggtttggcagaacaaactctcttggttgcactggggcat
gctgcagtgtactctgagaagcattcttctcctcctggaaatgtcaataatcctctagaa
gaggcagcaaaaattgtgaaacaagtatactctgttattcctgtgtacgataaaatagtt
cctactcttcttgctgcgggtgtgtggaatctcccaaagacatgtaacttttcaccaggt
attccagttggacccatgttggctaaaccaactaaaggagtatcagaaattgtagagaag
tttcatgacatagagttcacctgtgaatacaagtatgatggagaacgtgctcagatacac
tacatggagaatggtttagtggagatatacagtcgaaatgcagaacgaaatactggaaag
tttcctgatgttgttgctgctattacaagattgaagaaaccttctgtaacatcatttgtt
ctcgactgtgaacttgttgcgtacgaccgtgagaaacagaaaatcctgcctttccaggta
ctcagtacgcgtgcccgtaaaaatgttgtcatgagcgaaatcaaagttaatgtttgcgta
tttgcttttgatatcttgtatctcaatggacaacaacttctacaagagcaacttgacgtt
cgtagagagcatctttacaagtcttttgatgaagaatgcagtttcctccagtttgcaact
gctataacatcaaatgatctcgaggaaatacaaaagtttcttgaagattcagttgattct
agttgcgaggggttgatcatcaagactttgaataaagatgctacgtatgagccgtcgaaa
cggtctaataattggttaaaactgaaaaaggattacatggatagtattggtgactctctg
gatttggtaccaattggtgctttccatggacggggaaaacgcactggtgtgtatggtgcc
tttctgcttggttgttacgatacttccaaagaggaatttcaaagcatttgtaaaattggt
actggattttcagaagcaatgcttgaagaacgttctgccagccttcgctctaaagttatt
cccaagccaaagtcatattacaggtattctgattcaatcactccagatgtatggtttgaa
cccattgaggtttgggaggttaaatctgcagatctgactatcagcccagttcatcgtgct
gctattggaattgtggatcctgataagggaatttcactgcgatttccacggttacttcgt
gtccgagaagataagaatcctgaggaggcatcatcatcggatatgatcgcggagatgtat
actgctcagaagcacaatcaacgagacaatcaagatgaaaatgaggatgattga

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