Olea europaea var. sylvestris (wild olive): 111402433
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Entry
111402433 CDS
T05244
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111402433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oeu03021
]
111402433
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111402433
Transcription machinery [BR:
oeu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111402433
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111402433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
zf-C2H2
zf-ribbon_3
Motif
Other DBs
NCBI-GeneID:
111402433
NCBI-ProteinID:
XP_022886495
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Position
10:44006825..44013664
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AA seq
904 aa
AA seq
DB search
MNGGVSRYENPTPLKTGGFTKSAMPNDVAPHKPSPPLILDRFRGMLKEREVELSFFNNGG
HDSDSNMGTDEIVRLYEIVLSELTLNAKPIITDLTMIAGEQRAHGKGIANAICNRIIEVP
VKQKLPKLYLLDSIVKNIGKDYIRHFSARLPEVFCEAYMQVHHSMHPDMRHLFGTWSTIF
PSPVLRLIEAQLQFSPDVNSQPPGLAPLKASESPCPTYGIHINPEYLEAQHQFRHSTVDT
VGAKGLSTSTWTLTGHTSSSSPPSLHKFGVDSYRRASETASPSNSRFEYDLNRVKGREEE
TNKLQARNWHGEADQRLKNSAAVLNNGVDLQGPRALIDAYGIDHRDKKLNLKHPKVEQMG
VNDFDQKTASRTWQNTEEEEFDWDDMSPNLAHQGKYSLAAQRSAPLVTDFRSNSFQEQFS
STTDSSIVEGVLPFSSDHGGISRITGPHSASNQIAASSYTRESWSLPRQQLQHHLNAKEG
GSHSGIGAFSASDEQKPPTIGNFSSVDGQFFGSHSNVDSLAPEIRSANAPALTKAWYHAK
LHNSHPSPSLSALPPEFHIRGQFPIMNAGNVIINKSNQFEQHLDNIGISISNMPRAPTQL
FQPVVHPQLLPPRNHGYARHGPPIGTALSNLFTIVQSSVPILNAPNTSLHLPGTTIPSLP
RGPPPGTTQSIPPGNIDQAATNPPAQGALSGLISSLVAQGLISLTKQDSVGVEFDQDLLR
LRHESAITALYADLPRQCKTCGLRFKSQEEHSKHMDWHVNKNRTLKTRKLKPSPKWFVSI
SMWLSGAEAVGTEAVLGFLPADIDVEKKEDEEMAVPADDDQNVCALCGEPFDDFYSDEMD
EWMYRGAVYMNAHAGSPAGMDKSQLGPIVHAKCRSESHVIPAENFTKDEVESTEEGRQRK
RMRC
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcggcgtttcaagatacgagaaccctacgcctctcaagactggcggtttcacc
aagtctgcaatgccgaacgacgtcgcaccacataagccgtctcccccgttaattctcgat
cgtttcaggggcatgttgaaggagagagaggtagaacttagcttttttaataatgggggc
catgactctgattcgaacatgggtaccgatgaaattgtgcggctttacgagattgttctg
tcggaactcactttgaatgcgaagcctatcattaccgatctgacgatgattgctggagag
cagagagcgcatggcaagggcatagctaatgctatttgcaatcggattattgaggttcca
gttaagcaaaaattacctaagttgtatctattggatagtatagtgaagaacataggcaag
gattatattagacacttctctgcacgcttgcctgaggttttctgtgaggcctacatgcaa
gtccatcatagcatgcatcctgatatgcgccacctttttggtacctggtcgacaattttt
ccatcacctgtacttcgcttgattgaggcgcagttgcaattttcccccgatgtaaatagt
caaccacctggtttggctccattgaaagcttctgaatctccatgcccaacatatggcata
cacataaatcctgaatatttggaagcacagcatcagtttcgacattctactgtagacacg
gttggagccaaaggtttaagcacttctacttggacactcacaggccacacaagttcatca
tcacccccatcacttcataaatttggagtggatagttatcgaagggcttctgaaacggcc
tcaccatctaattctagatttgaatatgatcttaacagagtgaaggggcgagaggaagag
acaaataaattgcaagcaagaaattggcatggtgaagctgatcaacgtcttaaaaattct
gctgcggttcttaataatggagttgaccttcaaggacctagagctttgattgatgcttat
ggaattgatcacagggacaaaaaattgaacctcaaacatccaaaggtcgaacaaatgggt
gtaaatgattttgaccaaaagactgcttcccggacatggcaaaatactgaagaggaggaa
tttgattgggatgacatgagcccaaatttagcacaccagggcaagtacagtcttgctgca
caacgctctgcacctttggtgactgatttcagaagcaactcgtttcaggagcaattttct
tccactactgattcttccattgttgagggtgttctcccatttagttctgaccatggagga
attagtaggataactggtccacacagtgcctcaaaccagatagctgcttctagttatacc
cgagaatcatggagtttaccacgtcagcagttgcaacatcatttgaatgccaaagaaggt
ggttctcattcaggaattggagccttttccgcatctgatgagcaaaagcctcctacaatt
ggaaatttctcaagtgtagatggacagtttttcgggtcccattctaatgttgactcttta
gctcctgagattcgatcagccaatgcaccagctttaacaaaagcatggtatcatgcaaag
ttacacaattcacacccatcaccttccctttctgctcttcctccggaattccacatcagg
ggtcaatttcctattatgaatgccggcaatgtcattatcaacaagtcaaatcaatttgag
cagcatttggacaatattggcatttcaataagtaacatgcctcgagctcctactcagcta
ttccaaccagtagttcatccacagctactaccacctcgaaatcatggatacgcacgacat
ggtccccctattggtacagccttgtctaatctatttacgattgtgcaatcatctgtgccg
atcctcaatgccccaaacacatcattacatttaccagggacaaccattccgtctttaccc
aggggaccaccacctggcacaactcaatcaataccccctggaaatatagatcaagcggca
acaaaccctccagcacagggtgcactttcgggtttaattagttctcttgtagcacaaggt
ttgatatcattaacaaaacaggattctgtgggagtggagtttgatcaagaccttcttagg
ttgcgtcatgagtctgcaataactgctctatatgctgatcttcctagacaatgcaaaaca
tgtggccttcgattcaaaagtcaagaagagcatagcaaacatatggattggcatgtcaac
aagaaccggactttaaaaacccgtaaactgaagccttctcccaagtggtttgtgagcata
agtatgtggctcagtggggctgaggcagtgggaactgaagcagttttagggtttttgccc
gctgatattgatgtggaaaagaaagaagatgaagaaatggctgttcctgctgatgatgat
cagaatgtttgcgcattgtgcggagagccttttgatgatttttacagtgatgagatggac
gaatggatgtataggggggccgtatacatgaatgcacatgctggatcacccgcagggatg
gacaagtcacagttaggtcctatagtacatgctaaatgcaggtctgagtctcatgtgatt
ccagctgaaaattttacaaaagatgaagtggaatcaactgaagagggtcgtcaaaggaaa
aggatgcggtgttag
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