Olea europaea var. sylvestris (wild olive): 111407124
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Entry
111407124 CDS
T05244
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111407124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111407124
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111407124
mRNA degradation factors
5'-3' decay
Decapping complex
111407124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
TFIIA
Motif
Other DBs
NCBI-GeneID:
111407124
NCBI-ProteinID:
XP_022892206
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All DBs
Position
13:371732..379394
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AA seq
813 aa
AA seq
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MDGFGGGGPGGGVQESSNPQNLKPFGANPTGDAIFNASQYAFFDNNVVEEVELGGLEDEE
GDLPPVGLEDEEFLLDREEGDALDSLSEIDDLASAFSKLNGGVCGPIGGQRSRESSSAAE
WTQEADFPKWFDQRAFDAESARDSKGWSSQLYSSAQLMESKSLYRASSYPEPPQQHPHQN
QEQNLHQNYSSEPTLIPKSPFTSYPPPGGRYQQASPNSLSIHLNIPYAPGGYQMPILSPN
LSSLDNAQVQLNALPNGSQFGANLPQSTYGLPVNNQLHNQRLNQNSMHPGDHSSLPSKML
QQLPHHNGLMPPQQPLQQNRMKHPFQPSYGHLSGLQSQHFNTLPPSPPMMNNFNMLGLAE
FRDQRTISMPRNRQGFRYPQHDSNLGSQRSDNGWPKFKSKYMTTDEIENILRMQLVATHS
NDPYVDDYYHQACLAKKSAGAKLKHHFCPAILKDSSSRARANDEPHAFLQVDALGRVSFS
SIRRPRPLLEVDSPNSSGSASAEQQVVEKPLDQEPMLAARVTIEDGICLLLDVDDIDRFL
QFNQIQDGGAQLRQRRQVMLEGLASSLQLVDPLGKNGHTVDLAPKDDLVFLRLVSLPKGR
KLLLRYLQLLSSGGELTRVVCMTIFRHLRFLFGVLPSDPGASETTVELARTVSSCLQNME
LQALAACLASVVCSAEHPPLRPVGSLAGDGASVVLKSVLERATLLLTDPNASGSCSMTNR
AFWQASFDAFFGLLTKYCFNKYDFVMQSSLKQASPTVIGSDAARAIGKEMPVELLRASLP
HTSEQQKKLLLEFAQRSMPVLGLSSQGGESGGS
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggatggatttggaggtggggggcctgggggcggtgttcaagagtcctcaaatcctcag
aatcttaaaccgtttggtgcaaatccaacaggagatgcaatatttaatgcgtcacagtat
gcattcttcgataacaatgtggtcgaggaagttgagctagggggattagaagatgaagag
ggtgatctccctcctgttgggcttgaggatgaagagtttttgttggacagagaagagggt
gatgcactggattctttgtctgaaattgatgatctagctagcgcattttcaaagttgaat
ggaggtgtctgtgggcctattggaggtcagagatccagagaaagttcatctgctgctgaa
tggacacaagaggcagactttcctaagtggtttgaccagcgagccttcgatgctgaaagc
gctcgggacagtaaaggatggtcatcacagctatattcctctgcacagttaatggaatcc
aagtctttataccgagcatcttcataccctgaaccgccacagcaacaccctcatcaaaac
caggagcaaaacctacatcagaactactccagcgaaccaactcttattccaaaatcaccg
ttcacttcatatcctccccctggaggaagataccagcaagcttcaccgaacagcctgtct
atccacctgaatattccatatgcccctggtggatatcaaatgccaattttgtcgcccaat
ctttcttctttggataatgcgcaggttcaattaaatgccttacctaatgggtctcaattt
ggtgcaaatttacctcaatcaacctatgggcttccagttaataatcagcttcacaaccaa
cggctgaaccaaaatagtatgcatcctggagatcattctagcttgccgagcaaaatgttg
caacagttaccccatcacaatgggttaatgcctccacaacagcctttgcagcaaaacaga
atgaagcacccatttcagccatcctatggccatttatcagggttgcagtctcaacatttt
aataccctccctccatcaccacccatgatgaacaacttcaacatgcttgggttggctgaa
tttagagatcagagaactatttcaatgccgagaaataggcaaggctttcgttatcctcag
catgattctaatttgggcagccagaggagtgataatgggtggccaaagttcaaatccaag
tacatgacaactgatgaaattgaaaacattctcagaatgcagcttgttgctactcacagt
aatgatccttatgttgatgactactaccatcaagcttgtctggcaaagaaatctgctggt
gcaaagttgaaacatcatttctgccctgcaattttgaaggatagttcttcccgagctcgt
gctaatgatgagccacatgcttttctccaggttgatgctcttgggagggtttctttctct
tcaattcgcaggcctcgcccacttcttgaagttgactccccaaattcatctggcagtgcc
agtgctgaacagcaagtggttgagaagcctttggatcaggagccaatgcttgcagctagg
gtgactatagaggatggcatttgcctcctcctcgatgttgacgatattgaccgattccta
cagtttaatcagattcaagatggtggggcccagttgagacagcggagacaagttatgctt
gaaggtctagcatcgtcgcttcagcttgtagaccctcttggcaaaaatggtcacacagtg
gatttggctcctaaagatgatctggtgttcttaaggttagtttcccttcctaagggccgg
aaactcctattgcggtaccttcaacttctttcttctggtggtgaacttactcgagtagtc
tgcatgaccatcttccgtcatttgaggttcttgtttggtgtacttccttctgatcctggt
gcctccgaaacaacagtagaacttgctaggaccgtgtcatcttgtcttcaaaatatggag
cttcaagctctggctgcatgccttgcatcagtggtttgttcagcagagcatcctcctcta
cgtcctgttggaagcttggctggagatggagcttctgttgttcttaaatctgtccttgag
agagcaactctgctgctgacagatcctaatgcttctggcagctgcagtatgactaacagg
gcattttggcaggcctcttttgatgcattcttcggccttctcacaaagtactgctttaat
aaatatgacttcgttatgcaatcttccctcaagcaggcctcgcccactgttattgggtct
gatgcagccagagcgatcggtaaagaaatgcctgttgaactcttacgtgcaagtcttccc
cacacaagtgagcagcaaaagaaactgctattggaatttgcacagcggtccatgcccgtg
ctgggtcttagtagtcagggtggagaaagtggtggctcgtga
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