Oxalobacter formigenes: BRW83_1002
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Entry
BRW83_1002 CDS
T04835
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ofo
Oxalobacter formigenes
Pathway
ofo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ofo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRW83_1002 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ofo03400
]
BRW83_1002 (mfd)
Enzymes [BR:
ofo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRW83_1002 (mfd)
DNA repair and recombination proteins [BR:
ofo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRW83_1002 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ARQ45750
LinkDB
All DBs
Position
complement(1066091..1069549)
Genome browser
AA seq
1152 aa
AA seq
DB search
MPFDLKKFLPRPGQRYAMPALHGSADALVLAKAAQDLKSRQQMLVAIVANASDARRLLEE
IPWFSDETEEPLRCHLLPDWETLPYDSFSPHQDLVSQRLATLYEVSNGRCDVLLVPASTA
LLRIAPPAFLAAHTFYFKQGETLDEEKLKSQLTIAGYNHVSQVMSPGEYSVRGGLIDLFP
MGSKLPYRLDLFGDTIETIRTFDPDNQRSLYPVREIRMLPGHEFPMDENSRAFFRSRWRE
VFEGDPTLSVIYRDIASGIASAGIEYYLPLFFEETTTLFRYLPENAVFAMIGNVNEAFQR
FWADTQSRYNFLKSDRERPLLAPEKLFLTSEDFFVLAQPFARWVIQTDDAPSELSAPIPD
VSVNRRADDPLANLRAYIKRADKRVMICAESPGRRETMQQFFNEYDFKVTPCTGFADFAT
SKEQVMFGISPVQKGFALGYVFGDLAFITETELYANSGRRAGRKRTEAVAHIESIVRDLS
ELKIGDPVVHANHGIGRYRGLVTVDLGEGETEFLHLQYAKDTKLYVPVSQLHVISRYAGT
SADDAPLHTLGSGQWEKAKQKAAQQIHDTAAELLDLYARRSMRKGFPFPLTKNDYEAFAD
SFGFEETPDQAAAIASVMEDMTSDKPMDRLICGDVGFGKTEVALRAAFIAVMGGKQVALL
APTTLLAEQHAQTFRDRFADWPVRISELSRFRTQKQVNQTIKGMEDGTVDIVIGTHKLLS
KDVSFNRLGLIIIDEEHRFGVRQKEALKAIRAEVDVLTLTATPIPRTLGMALDGLRSFSI
IATAPQKRLAIKTFVRSENDSVIREACMRELKRGGQVYFLHNEVETIENRRIMLENLLPE
ARIGVAHGQMHERELEKVMRDFVSHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQ
LHQLRGRIGRSHHQAYAYLLVNDTQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGA
GEVLGEEQSGEMVEIGFQMYSDMLKEAVRAMKKGEEPDYDAPFTTTTEINLHTPALLPGD
YCPGVNERLSLYKRFANCETQEQVNDLQEELIDRFGKLPEAAQALVETHRLRIQAKTVGI
IKIDAHTEAAVMQFVPNPPIDAIRIIEIIQKNKHIRLNGPEKLKVTAKMPNLDARVAQIK
STIRSLTASSKK
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgatctcaagaaatttcttccccgtcccggacaacgctacgcgatgccagcc
cttcacggctcggcagatgccctcgtgctcgccaaagccgcacaggatctgaaatcgcgt
cagcaaatgctggtcgccatcgttgccaacgcatcggacgcacgacgccttctggaagaa
atcccctggttttcagatgaaacggaagaacccttgcgctgccacttgctgcccgactgg
gaaacgctgccatacgactcgttttccccgcatcaggatctggtatcgcagcgtctggcg
acgctctacgaagtgtcaaacggacgttgtgacgttctgctcgttcctgcctcgaccgcc
ctcttgcgcatcgcgccgcccgcttttctcgcggcacacaccttttatttcaaacagggt
gaaacgctcgacgaagaaaaactcaagtcgcaactgacgattgccggatacaaccacgta
tcgcaagtcatgtcgccgggtgaatattccgtccgtggcggcctgatcgacctgttcccg
atgggatcgaaactgccttaccggctcgacctgttcggcgacaccatcgaaactatccgt
actttcgatccggacaatcagcgctcgctttatccggtcagggaaatccggatgctgccc
ggccatgaattcccgatggacgagaattcccgcgcctttttcagaagccgctggcgcgaa
gtcttcgagggcgatccgaccctttccgtcatttaccgcgatatcgccagtggcattgcc
tcggccggtatcgaatactatttgccgcttttcttcgaggaaacgacgaccctgttccgt
tacctgccggaaaacgccgttttcgcgatgatcggcaatgtcaacgaagcgttccagcgt
ttctgggccgatacgcagtcgcgttacaatttcctgaaatccgaccgtgaacggccactt
ctggcgcctgaaaaactgtttttgaccagcgaggatttttttgttctggcacagccgttc
gcccgctgggtcatccagacagacgacgcgccatccgaattgtccgccccgattcccgac
gtatccgtcaaccggcgtgcagacgatccgcttgcgaacctgcgagcttatatcaaacgt
gccgacaaacgcgtgatgatctgcgcagaatcgcccggacggcgcgaaacgatgcagcag
ttcttcaacgaatacgatttcaaggtcacaccctgcaccggttttgccgactttgccaca
agcaaggaacaggtgatgttcggcatttcgccggttcagaaaggttttgcgctgggttat
gttttcggtgatctggctttcattaccgaaaccgagctttacgccaattcaggacgtcgc
gcaggacgcaagcgtactgaagccgtcgcccatatcgaatcgatcgtccgcgacctgtct
gaactgaaaatcggcgatccggtcgtgcacgccaatcacggcatcggtcgctatcgcggg
ctggtcaccgtcgatctgggcgaaggcgaaaccgagtttctgcatctgcaatacgcgaaa
gacaccaagctttacgttcccgtttcgcagcttcacgtcatttcccgctatgccgggaca
tcggcggatgacgctcctctccatactcttggatcgggccagtgggaaaaagccaaacag
aaagccgcacaacagattcacgataccgccgccgagctgcttgatctgtatgcccgccgc
tccatgcgcaagggtttccctttcccattgacgaaaaacgattacgaggcctttgccgac
agttttggtttcgaggaaacaccggatcaggccgctgccatcgcttccgtcatggaagac
atgacctccgacaaaccgatggaccggctgatttgcggcgatgtcggtttcggcaagacc
gaagtggccttgcgtgcggcttttatcgccgtcatgggcggcaaacaggtagccctgctg
gcaccgaccaccctgctggccgagcagcatgcccagaccttccgcgaccggtttgccgac
tggcctgtccgcatttcggaactgtcccgcttccgtacccagaaacaggtcaaccagacc
atcaagggcatggaagacggcaccgtcgatatcgttatcggtacccacaagcttttgtcc
aaagacgtttcattcaaccgacttggcctgatcatcatcgatgaggaacaccgtttcggc
gtccgccagaaggaagccttaaaagccattcgcgccgaagtggatgtcctgaccctgacg
gcaaccccgatcccgcgaacgctcggcatggcgctggatggcctgcgcagcttttcgatc
attgcgaccgccccgcaaaaacggctggcaattaaaactttcgtgcgttccgaaaacgac
tccgtcatccgggaagcctgtatgcgcgaactcaagcgtggcggtcaggtttactttctg
cacaacgaagtcgaaacgatcgaaaaccggcgcatcatgctggaaaacctcttgccggaa
gcgcgtatcggcgtcgctcacggccagatgcatgaacgcgaacttgaaaaagtcatgcgt
gacttcgtttcgcaccgctataacatcctgctgtgcacgacgattatcgaaaccggcatc
gacgtcccgaacgccaatacaatggtcatgcatcgcgccgacaagttcgggctcgcccaa
ttgcaccagttgcgtggccgtatcggccgttcgcaccatcaggcttatgcctacctgctc
gtcaacgatacgcagaccctgtccaagcaggcgcagaggcgtctggaagccatccgccag
atggaagagttgggcagcgggttcttcctcgccatgcacgatctcgaaatccgtggtgct
ggcgaagtgctgggagaagaacaatccggtgaaatggtcgaaatcggattccagatgtac
tccgatatgctgaaagaagcggttcgtgccatgaaaaaaggcgaagaaccggattacgac
gcgcctttcaccacgacgacggaaatcaatctgcatacaccggccctgttgccgggagac
tattgccccggtgtcaatgaacggctttccctgtacaaacgattcgccaactgtgaaaca
caggaacaggttaacgatttgcaggaagaactcattgaccgcttcggaaaactgcctgaa
gcggctcaggcactggtcgaaacccatcgtctgcgcattcaggccaaaacagtgggtatc
atcaagatcgacgcccatacggaagcggctgtcatgcaatttgtcccgaatccgccaatc
gatgccatccggattatcgagataatccagaaaaacaaacatatccgtctgaatggccct
gaaaagctgaaagtcacggcaaaaatgccgaatctggatgcacgggtcgcccaaatcaaa
tcaaccatccgttcactgacagcctcttccaaaaaataa
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