Ostrinia furnacalis (Asian corn borer): 114357898
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Entry
114357898 CDS
T07986
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ofu
Ostrinia furnacalis (Asian corn borer)
Pathway
ofu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ofu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114357898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ofu03021
]
114357898
03019 Messenger RNA biogenesis [BR:
ofu03019
]
114357898
Transcription machinery [BR:
ofu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114357898
Messenger RNA biogenesis [BR:
ofu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114357898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
VHS
Ribosomal_L34e
Motif
Other DBs
NCBI-GeneID:
114357898
NCBI-ProteinID:
XP_028167493
LinkDB
All DBs
Position
Unknown
AA seq
1602 aa
AA seq
DB search
MSKEIAEEYASSLSDLTVNSKPLINMLTILAEENIDHAGVIVETVEKHLEKVNPDIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVDEKVRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPQQSNIHVNPNFLKKNAPTTSTPAPPTEEEEKMRTILVKKEQE
LLMLQRKKIEMELEQTRRQLELAEKNAKKVTTIIPPNSIMPAMPVAMVNPVVAPVAVPDG
PGLNNVPGLNNVPAKMRLGPPVNKPAGGRIAPVSAALAAARRDPRLARAPPRAPASPPIA
PHVFDIKPLDHAKRKNVLTIDIDPTADPRLARRDPRLDRRRARPRPDPAPAVDPAPDSDA
KRISRLPPIPKLRREPEPADEQAKRRKEAREDRRRRREADASKDSGSSSSPDKKARAKEP
KDKERRRRRAEPEAAPEPALVTFNERRISHKERFMRRNKQKSESPEPAAEPAPATNVPEV
VAETKDVDLRVLPAVDAKAAPVAQKRPSTELLDGKTKKTKLDKFDVLFGNEDVDLRQLPQ
VEEVTAPPPPTLTPASPKEDDKMEEDKVPSPPGSPKKDWHEVKEKTDETKKTPSKLDLVR
AKLAEATKGTDRLGRPLLFSKSPSIERERRRTLSSEDTDLRPEHPEEFDAEDHKKSISII
MSQAKEQFHDGQLDKSQYNTLMYQVLQLNEKLKLKEAKQRESLEISKRKLQAAHGPNNYG
DIDERVTPGPGPPPPPGPPARDLDLRRPLLPRPPAFVYRPAWRAPRARVDEYVPRPAADF
GPRRFRPPYFRAPWPPYEPRPPPPPAPMPGMCQGECPLPPYERTVSPPPLGVGAAEIPPP
DPRVLEFIDRDPVKTIQIDGVPREIRFYGETAVIMMDWDDPREIRFLPGRRRVTFDNKDS
VVLGFNEPYRRVEVDDQAFDIRLGAPTRELYIDGRWFEVFFGGQPAGVLVGGRARRLALE
GPAPQVDVGKARRTDLVVGKINVIVNAVHVCPVYLDARVQEFHAAGQRFTLRFADALRTV
LINERPFRVEFGDLPKAVHLGGEKYFIRFSALPRGVRPGLVRIEGMAGAAPGPAPPLPAP
DLPAPPLEMDAETVLPPKKSPSPDINPENQGLDMLASVMPSSFSSAPTSASEYSCAEPLF
TKPDKIPGLETPADEKPNPLVPVLGNINVNDLFAKLLATGIVQVPKETKDEPKLEQKPEE
KPKPKEDKSVIHRVDLLKPETLRVSKQPGLVSRLYGGMQCSGCGARFPPEHTVRYSQHLD
WHFRQNRRDRDSARRAHSRHWHYDLSDWLQYEEVEDLEEREKSWFETAGAEQTEPPEPAG
EAPSVAAGAPAESTCALCGDAFQQFYNEDKEEWHLRNSVRHDGNNYHPMCLDDYKASLTK
EEPPKEETPAEVPVETNEDPIEVLDADDNVDSDAESVVEVVTEPLPEPVEIDEGDEDDVV
FKAEPVEEVVVQDDADTDDETADTRRERDRQAQLDFHNVKIKQEPIDPDDEPVITAEELS
PQPTIDTTHTTVLSSIDGNLQLDSAPATAPVTGGIRINISKSIPAPAPADRLDDVSADDE
PLPPGEEPELEYTLKPALQGRRLSRQPPVMKGNELSGLCSIM
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggaaatagcagaggagtacgcttcgagtttgtcggacctgaccgtcaacagc
aagccgttgatcaacatgttgaccatactcgcggaagagaacatcgaccatgccggggtt
atcgttgagacggtggagaagcatttggagaaggtgaatccggacatcaagctgcctgta
ctgtatttagttgattccattatcaagaatgtcggtggagcgtacacccagaaattctca
cagagcattgtgaacatgttcactaggacgttcaaacaggtggatgagaaagtgagatct
caaatgttcaaactccgtgagacgtggcacgatgtgttcccagcgacgaagttgtaccaa
ctggatgtgaaagtgaacttgatcgatccggcctggccgatccaagctcagccgcagcag
tcaaacatccatgtaaatccaaattttctgaaaaagaatgctccaacaaccagcacgcct
gccccacccactgaagaagaagaaaagatgcgcaccatcctcgtcaagaaggagcaggaa
cttctcatgctccaaaggaaaaagattgaaatggaactggagcagacaaggaggcagctg
gaactggcagagaaaaacgctaaaaaggtgaccacgataatcccgccgaactcgatcatg
cccgccatgcctgtggccatggtcaacccggtggtggcccccgtggcggtcccggacggg
cccgggctcaataacgtgcccgggctcaataacgtgcccgccaagatgaggctgggaccg
cccgtgaacaaaccggcgggcggtcgcatcgcgcccgttagcgccgcgctggccgccgcg
cgccgcgaccctcgcctcgcgcgcgccccgccccgcgcgcccgcctcgccgcccatcgcg
ccccacgtgttcgacatcaagccgctcgaccacgccaagcgcaagaacgtgctcaccatc
gacatcgacccgaccgccgacccgcgtctggcccgccgcgacccgcgcctggaccgccgc
cgcgcgcgaccgcgacccgatcccgcgccagccgtcgaccccgcgcccgactccgacgcc
aaaaggatcagccggctcccgccgatcccaaagctgcgccgggagccggagccggccgac
gagcaggcgaagcgtcgcaaggaggcgcgcgaggaccggcgccggcgccgcgaggccgac
gcctccaaggactcgggctcgtcgtcgtcgccggacaagaaggcgcgcgccaaggaaccc
aaggacaaggagcggcggcgccggcgcgcggaacccgaagcggcgccggagccggcgctg
gtgacgttcaacgagcgccgcatctcgcacaaggagcgcttcatgcgccgcaacaagcag
aagtcggagagcccggagcccgccgccgagcccgcgcccgcgacaaatgtgccagaagtg
gtggcggaaaccaaggacgtggatcttcgtgtgctgcccgcggtcgatgccaaggccgcg
cccgtcgcgcagaaaaggccgtccactgaactcctggatggaaagaccaagaagaccaag
cttgataagttcgatgtcttattcggcaacgaggacgtcgatctccggcagctacctcaa
gtggaagaggtgaccgcccctccccctcccaccctcaccccggcctcccccaaggaggat
gacaaaatggaggaggacaaggtcccctccccgcccggctcgcccaagaaagactggcac
gaagtcaaggagaagaccgatgagaccaaaaagaccccgtccaagctcgacctagtccgg
gcgaagctcgccgaagccacaaaaggaacggatcgactcggccgaccgctgctgttcagc
aaatcgccaagtatcgaaagggaaaggcggcgcacgctcagctccgaggacacggacctc
cggccggagcaccccgaggagttcgacgccgaggaccacaagaagtccatctcgatcatc
atgagccaggccaaggagcagttccacgacggccagctcgacaagagccagtacaacacg
ctcatgtaccaggtgctgcagctcaacgagaagctcaagctcaaggaggccaagcagcgc
gagtcgctcgagatctccaagcgcaagctgcaggccgcgcacgggcccaacaactacggg
gatatcgacgagcgcgtcacgcccgggcccggcccgccgccgccgcccggcccgcccgcg
cgggacctcgacctgcgccgcccgctgctgccgcgtccgcccgccttcgtctaccggccc
gcctggcgcgcgccccgggcccgcgtcgacgagtacgtgccgcgtcccgccgccgacttc
ggcccgcgccgctttcgcccgccctacttccgcgcgccctggccgccctacgagccgcgc
ccgccgccgccgcccgctcccatgcccggcatgtgccaaggcgaatgcccgctgccgccc
tacgagagaaccgtctcgcctccgccgctcggcgtcggcgccgccgagatcccgccgccg
gacccgcgcgtgctcgagttcatcgaccgcgaccccgtgaaaacgatccagatcgacggc
gtgccgcgcgagatccgcttctacggcgagaccgccgtcatcatgatggactgggacgac
ccgcgcgagatccgcttcctgccgggccggcgccgcgtcacgttcgacaacaaggactcg
gtggtgctcggcttcaacgagccgtaccggcgcgtggaggtggacgaccaggcgttcgat
attcggctcggcgcgccgacgcgggagctgtatattgatgggcgctggttcgaggtgttc
ttcggcgggcagccggcgggcgtgctggtgggcggacgcgcgcggcggctggcgctggag
ggtccggcgccgcaggtggacgtgggcaaggcgcggcggacggacctcgtggtgggaaaa
atcaacgtgatcgtcaacgcggtgcacgtgtgcccggtgtacctggacgcgcgcgtgcag
gagttccacgcggccggccagcggttcacgctgcggttcgcggacgcgctgcgcacagta
ttaatcaacgagcggccgttccgcgtggagttcggggacttacctaaggccgttcacttg
ggaggcgagaagtacttcatccgcttctcggcgctgccgcgcggcgtgcggccggggctc
gtgcgcatcgaaggcatggcgggcgcggctcccgggccggcgccgccgttacccgcgccc
gacctgccggcgcctccgctggaaatggacgcggagacagtcctgcccccgaagaaatcg
cccagcccagatatcaacccggagaatcaaggtctggacatgctagcgagcgtgatgccc
tcaagcttcagctctgcacccacatcagcctcagaatacagttgtgcagaaccgctcttc
accaaaccagacaagatccccgggttagaaacccccgcggacgaaaaacccaaccctctg
gtaccggtgttaggaaacatcaacgtcaacgacctcttcgcgaagctactggccaccggc
atcgtccaagtgccgaaagagacgaaagacgagccgaaactggagcagaagcccgaggag
aagccgaagccgaaagaggataagagcgtcattcacagagtggacttgctcaaacctgag
acgctgagagtcagcaaacagccgggtctggtgagccggctgtacggaggcatgcaatgc
tccggctgcggcgcgcgcttcccgcccgagcacactgtgcgctactcacagcacctggac
tggcacttccgccagaaccgccgcgaccgggactcggcgcgccgtgcccactcgcggcac
tggcattacgacttgtccgactggctgcagtacgaggaggtcgaggatttggaggagaga
gaaaagagctggttcgagacagccggcgcggagcagacggagccgccggagccggctggc
gaggcgccgtcggtggccgcgggcgcgccagctgagagcacgtgcgcgctgtgcggcgac
gccttccagcagttctacaacgaggacaaagaggaatggcatctacgcaactctgtcagg
cacgatgggaataattaccatccgatgtgcttggacgactataaggcgtcgctcacaaaa
gaggagccccccaaagaggagacacctgcagaggtgccagtggagaccaacgaggacccc
atcgaggttctggatgcagacgacaacgtggattccgacgcagaatccgtcgtggaggtc
gtcaccgagccactgccggaacccgtcgagatcgacgaaggcgacgaggacgacgtggtg
ttcaaggccgagccggtggaggaggtggtggtgcaggacgacgccgacaccgacgacgag
accgccgacacgcgccgcgagcgcgaccgccaggcgcagctcgacttccacaacgtgaag
atcaagcaggagcctattgacccagacgacgagccagtgataacggcggaggagctgtcc
cctcagccgacgatcgacacgactcacaccacggtcctgtcgtccatcgacggtaaccta
cagctcgacagcgcgcccgccaccgcgcccgtaaccggcggcattcgcatcaacatctcc
aagtcaatacctgccccggcgcccgccgatcgcttggatgacgtcagcgcggatgacgag
cccctcccgcccggggaagaaccagaactcgagtacaccctcaaacccgccctccaaggc
cgccgactcagccgccaaccacccgtcatgaagggcaacgaactctccggactgtgctcc
attatgtga
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integrated database retrieval system
