Otolemur garnettii (small-eared galago): 100963644
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Entry
100963644 CDS
T07855
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03013
Nucleocytoplasmic transport
oga03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100963644 (UPF1)
03015 mRNA surveillance pathway
100963644 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oga03019
]
100963644 (UPF1)
Enzymes [BR:
oga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100963644 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100963644 (UPF1)
Messenger RNA biogenesis [BR:
oga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100963644 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100963644 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100963644
NCBI-ProteinID:
XP_003796631
Ensembl:
ENSOGAG00000012866
UniProt:
H0X7W8
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGD
EICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYF
QTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGR
QKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttcgcagacgctcactttcttggacactgaggag
gccgagctgcttggcgccgatactcagggctccgagttcgagttcaccgactttaccctc
cctagtcagactcagactcccccaggtggcccgggcggccccggaggtggaggcgcggga
ggcccgggcggcgcgggcgcaggcgctgcggcgggacagctcgacgcgcaggttggacct
gagggcatcctgcagaatggggctgtggatgacagtgtggccaagaccagccagttgttg
gccgaattgaactttgaagaagatgaagaagacacctattacacgaaggacctccccata
catgcctgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaacaccagc
aagaagtggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctt
gtgagggcaaaatgtaaagaagtgactctacacaaggatgggcccctaggggagacagtc
ctggagtgctataactgtggctgtcgcaatgtcttcctcctcggtttcatccccgccaag
gctgactcggtagtggtgctgctgtgcaggcagccctgtgccagccagagtagcctcaag
gacatcaactgggacagctcacagtggcagccactgatccaggatcgttgcttcctatcc
tggctggtgaagattccttctgagcaagagcagctgcgggcacgccagatcacagcacag
cagatcaacaagctggaggagctctggaaggaaaacccttctgccaccctggaggatctg
gagaagccaggggtggatgaggaaccacagcatgtcctcctgcggtatgaggatgcctac
cagtaccagaacatatttgggcccctggtcaagctagaggctgactatgacaagaaacta
aaggagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctgatatgcggctcatgcagggggat
gagatatgcctgcggtacaaaggggaccttgcgcccctgtggaaggggattggccatgtc
atcaaagtccctgataattatggtgatgagattgccattgaacttcggagcagtgttggt
gcacctgtggaggtgactcataatttccaggtggattttgtgtggaagtcaacctcattt
gataggatgcagagtgcattgaaaacgtttgctgtagatgagacctctgtgtctggctat
atctaccataaattgctaggccatgaggtggaggatgtgatcattaagtgtcagctgccg
aagcgcttcacagcacaagggctcccggacctcaaccactctcaggtttatgctgtgaag
actgtgctgcagaggccactgagcctgatccagggcccgccaggcacagggaagacagtg
acatcagccaccattgtctatcacctggctcggcaaggcaacgggcctgtgcttgtctgt
gctccaagcaacattgctgtggatcagctgacagagaagatccatcagacggggctgaag
gttgtgcgcctctgtgccaagagccgtgaggccattgactccccagtgtccttcctggcc
ctgcataaccagatcaggaacatggacagcatgcctgagctgcagaagctgcagcagctg
aaggacgagacgggggagctgtcatctgctgatgagaagcggtaccgggccctgaagcgc
actgctgagagggagctgctcatgaatgcagatgtcatctgctgcacatgtgtgggcgct
ggtgacccaagacttgccaagatgcagttccgctccattttaattgatgaaagcacccag
gccaccgagccggagtgcatggttcctgtggtcctcggtgccaagcagctaatccttgtg
ggtgaccactgccagctgggcccagtggtgatgtgcaagaaggcagccaaggctgggctg
tcacagtcgctctttgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtc
cagtatcggatgcaccctgcactcagtgccttcccatccaacatcttctacgagggctct
ctccagaatggtgtcactgcagcggatcgtgtgaagaagggatttgacttccagtggccc
caacctgacaagccgatgttcttctacgtgacacagggtcaagaggagattgccagctca
ggcacctcctacctgaacaggacggaagctgcaaatgtggagaagattaccacgaagctg
ttgaaggcaggtgccaagccagatcagattggcatcatcacaccctatgagggccagcgc
tcctacctggtgcagtacatgcaattcagtggctccctgcacaccaagctctaccaggag
gtagagatcgccagtgtggatgccttccagggacgtgagaaggacttcatcatcctctcc
tgtgttcgggccaacgagcaccaaggcattgggtttctaaacgaccccaggcgtcttaat
gtggccctgaccagagcaaggtatggcgttatcattgtgggcaaccccaaggcactgtct
aagcagccactctggaatcacctgctgaactactacaaggagcagaaggtgctggtggag
ggtcccctcaacaacctgcgcgagagcctcatgcagttcagcaagcctcggaagctggtt
aacactatcaacccaggagcccgcttcatgacgacagccatgtatgacgcccgagaggcc
atcatcccaggctctgtctatgatcgcagcagccagggccggccctcaaatatgtacttc
cagacccacgaccagattggcatgattagtgctgggcccagccatgtggctgcaatgaac
atacccatccctttcaacctggtcatgccacccatgccaccacctggctactttggacaa
gcaaatgggccagctgcaggccggggcactccgaaaggcaagactgggcgtgggggacgt
cagaagaaccgctttgggcttcctgggcccagccagaccaacctccctaacagccaggcc
agccaggatgtggcatcccagccattctcccagggcgccctgacacagggctacatctcc
atgagccagccctctcagatgagccaacctggcctctcccagccggagctgtcccaggac
agttacctcggtgatgagtttaagtcacagattgacgtggcgctctcacaagactccaca
taccagggagagcgggcataccagcatggcggggtgacggggctatcccagtactag
DBGET
integrated database retrieval system
