Oryza glaberrima (African rice): 127754237
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Entry
127754237 CDS
T08853
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127754237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127754237
03041 Spliceosome [BR:
ogl03041
]
127754237
03009 Ribosome biogenesis [BR:
ogl03009
]
127754237
03016 Transfer RNA biogenesis [BR:
ogl03016
]
127754237
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127754237
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127754237
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127754237
Complex C
U4/U6.U5 tri-SnRNP related factors
127754237
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
Pre-60S particles
Helicases
127754237
Transfer RNA biogenesis [BR:
ogl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127754237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
ATPase_2
FlxA
Motif
Other DBs
NCBI-GeneID:
127754237
NCBI-ProteinID:
XP_052135686
LinkDB
All DBs
Position
11:complement(3675815..3682881)
Genome browser
AA seq
1003 aa
AA seq
DB search
MEEVENTSKRKAPESEHAAAVSGEHPPPPPPPDAAAKRRNLSRSCIHEVAVPKGYAAAKD
EAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA
MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAML
YRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI
CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ
VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS
KLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKELV
ELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRR
GKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVI
RNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI
RPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPQSGTLPPALSASRGNNYIVDTLL
HCSSSSNENGFRSKPLPPRPGEKGEMHVVPVPLPLLSGLSSVRINIPPDLRPPEARQNIL
FAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLRSHPLHKSDQSEQQLS
WYQRKAELNHEIQMLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLI
DTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR
KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARR
LDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANSLYL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtggagaacacgagcaagcggaaggcgccggagagcgagcacgccgccgcc
gtctcgggggagcatccaccgcctccgccgccgcctgacgcggcggcgaagcggcggaac
ctgtcgcggtcgtgcatccacgaggtggcggtgcccaagggctacgccgcggccaaggac
gaggcggtgcacgggacgctctcgagcccggccttccatggcgagatggccaaggcctac
ccgttccagctcgaccccttccagagcgtctccatcgcctgccttgagcggaacgagtcg
gtgctcgtctccgcccacacctcggcggggaagaccgccattgccgagtacgccatcgcc
atgtcgttccgggacaagcagagggtcatatacacctcccctctcaaggccctcagcaac
cagaagtacagggagctcagccaggagttctccgatgtcggattgatgaccggcgatgtc
acgctgcagccgaacgcgacttgcctcgtcatgaccacggagatcctcagggcaatgctc
tacagggggtccgaggtgatcaaggaggttgcctgggttatcttcgatgagatccactac
atgaaggatcgcgagcgcggggtcgtgtgggaggagagtataatattcctgccacctgcc
atcaagatggtgttcctctctgccaccatgtcgaacgcgaccgagtttgccgagtggata
tgcaatctgcacaagcaaccttgtcatgtggtgtatactgacttcaggccgacaccgtta
cagcactatgtgttcccgattggcggctccggtctctaccttgtagtagatgaggatggc
caattcagagaggataattttttgaagctgcaagacacgttcacaaagcaaagtaatcaa
gtggatggaaggaagggtggtggacctaaagccagtggtcgaatagcaaagggcggaagt
gcctctggaaattcggacatatacagaatcgtcaagatgattatggaacggaagtttcaa
ccggtcataattttcagctttagcagaagagaatgtgaacaccatgccatgtcaatgtca
aaacttgacttcaacactgatgaagaaaaagataacatcgaacaggttttcagcagtgct
attctatgtttaagtgaggaagatagaggtttgcctgctatagagttgatgttgcctctt
cttaaacgaggtattgcagttcaccattctggattgcttccattaattaaagagctggtg
gagttgctcttccaagaaggccttgtaaaagctctctttgctactgaaacatttgccatg
ggactgaatatgcctgcaaaaaccgttgtgttcacgtctgtcaaaaaatgggatggtgat
actaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcggcgt
ggcaaggatatacgtggaatttgtgttataatgatagatgaaaaaatggagatgagtgtt
ataaaggacatggtgttaggtaaaccagcacctcttgtcagtactttccggctgagctat
tacacaattctcaatttaatgagtcgcgtggagggccagtttactgctgagcatgtgatc
aggaattcattccatcagtttcaatatgagaaggcattgccagaagtggtgcagaagatt
acatcattggaaaatgaagctaccttacttgattcttctggagagactgatcttgcagaa
tatcataaattggggcttgatatatcggaacttgaaaagaaaatcatgtcggagatgatt
agaccagagagggctttgttatacttggttcctggaaggctggttaaagtgagagatggt
tcaacagactggggatggggtgtggttgtaaatgtggttaagaaacctccacaatctggt
actctccctcctgcactaagtgcatctcgtggtaataactatatagtggataccctgctt
cactgttcttctagttcgaacgagaatggattccgttcaaagccattgccaccacgccca
ggggagaagggagaaatgcatgtggtgcctgtaccactacctttattatctggtctaagc
agtgttagaatcaacattcctcctgatctacgaccacctgaagcaagacaaaatatactt
tttgcagtgcaagagctgggaaagcggtacccccaaggtcttccaaagctagatccaatc
aaagacatgggtcttcaagaacctgaactagtggagttggttcataagcttgatgatctt
gagcagaaactgcgttctcatccacttcataagtctgatcaaagtgagcagcaactgtca
tggtatcaaagaaaagctgagctaaatcatgaaattcaaatgctaaagtcaaagatgcgg
gattcgcagctacaaaaatttagagatgagcttaggaatcggtcccgtgttctgaagatg
cttggtcacattgatgctgatggtgtgctccagctgaaaggacgtgctgcctgtttaata
gacacaggggatgagctgcttatcactgaacttatgtttaatggtacatttaacgatctt
gatcatcatcaagttgcttcccttgctagctgctttataccttgtgagaagtctagtgaa
caaatacgcctgagaagtgagctttctacaccaatgatgcagctacaggaggctgcgaga
aaaatagctgaggtacaaaaagaatgcaaattagaggtaaatgttgaagaatatgtcgaa
tcaacttgtaggccctacctgatggatgtcatatactgttggtcaaagggggccactttt
ggagaggtgatagaaatgactgacatttttgaaggaagtatcatacggctggctagaaga
ctggatgaatttctgaatcagttgaaagctgctgctcaagctgttggtgaggttaacctt
gagaacaagttcggagcggccagtgacagcttacgtcggggtatcatgtttgccaactca
ttgtatctgtga
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