Oryza glaberrima (African rice): 127757482
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Entry
127757482 CDS
T08853
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127757482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127757482
03041 Spliceosome [BR:
ogl03041
]
127757482
03009 Ribosome biogenesis [BR:
ogl03009
]
127757482
03016 Transfer RNA biogenesis [BR:
ogl03016
]
127757482
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127757482
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127757482
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127757482
Complex C
U4/U6.U5 tri-SnRNP related factors
127757482
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
Pre-60S particles
Helicases
127757482
Transfer RNA biogenesis [BR:
ogl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127757482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
127757482
NCBI-ProteinID:
XP_052138959
LinkDB
All DBs
Position
12:9135448..9143754
Genome browser
AA seq
998 aa
AA seq
DB search
MATLKRKADSAAAELASPPPKAPRGSEALAESPALAGEPVACVHDVSYPEGYDPSAPATH
LLNGGAGAEGAGPAKTFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSL
RNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKG
SEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKV
HKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKSKFREDSFQKALNALVPASENDKK
RENGKWQKGLLTGKPSEDSDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLND
DDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQE
GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQRG
ICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEDGDPEKLLRHSFYQFQ
ADRALPDLEKQVKELELERNSMIIEEEENLKSYYDLLQQYKNLKKDVRDIVHSPKYVLPF
LQPGRLARVQYSTDEQSTFSIDENITWGVTINFEKVKTHSEDRRPEDSDYTVDVLTRCSV
SKDKSGKKTMKIIPLKDRGEPVVISLPLSQIDGLSSIRMHIPKDLLPVEARENTLRKVDE
VISRFAKDGIPLLDPEEDMKVQSSSFRKASRRIEALESLFEKHDVHNSPHIKQKLKVLHA
KQELSAKIKAIKKTMRSSTALAFKDELKARKRVLRRLGYITSEDVVEVKGKVACEISSAD
ELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFFQLQETARRVAN
LQLECKIQIDVESFVNSFRPDIMEAVYSWAKGSKFYQIMEMTQVFEGSLIRAIRRLEEVL
QQLILASKSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctcaagcgtaaggccgattccgcggccgccgagctcgcgtcccctcctccc
aaggccccgcggggctcggaagcactcgctgaatcgcccgccctcgccggcgagcccgtc
gcctgcgtgcacgacgtctcctacccggaaggctatgacccgtccgcccccgccacccac
ctgctcaacggcggcgccggcgccgagggtgctgggcctgccaagaccttcccgttccag
ctcgaccccttccaggccgaggccatccgatgcctcgacaacggcgaatccgtcatggtc
tcggctcacacatcagctggaaagactgtggttgcattgtatgcaatagcaatgtctttg
cgtaatcagcaacgtgtcatctatacatctccaatcaaggctttgagtaaccaaaagtac
agagaattcaaagaagagttctctgatgttggcctcatgactggggatgttactattgag
ccaaatgcatcttgtttggtcatgaccacagaaatttggcgtagcatgcagtataaagga
tcagaagtcatgagggaagtagcttggattatatttgatgaagtacactacatgcgtgat
agagagagaggagtggtgtgggaggagagtatagtgatggctcctaagaactcacgattt
gtgttcctctcagctaccgtgcctaatgccaaggagtttgctgactgggtggctaaggta
cataagcaaccttgtcatatagtatacactgactaccggcctacacctctccaacactat
gtatttccttctggaggtgatggtttatatctggtagttgatgagaagagcaagttcaga
gaggatagttttcagaaagctttgaatgcgcttgtccctgctagtgagaacgacaaaaag
agggaaaatgggaagtggcagaaaggtctcttgacaggaaaacctagtgaggacagcgac
atattcaagatggtgaagatgataattcagcgtcaatatgacccagtcatactttttagc
tttagcaaaagggagtgtgaatttcttgctatgcagatggctaagatggacttgaatgat
gatgatgagaaggcaaacattgaaacaattttttggagtgctatggatttgctttcagat
gatgataaaaagcttccccaggtttcaaatatgcttcccttattgaaacgtggcattggt
gtacatcattctggtcttttgcccattttgaaggaagtgattgagatactcttccaagag
ggccttatcaagtgtttgtttgccacagaaacattcagtattggtttgaacatgcctgca
aagactgttgtgtttaccaatgtgcgaaaatttgacggtgatcgattcagatggttgtca
agtggagaatacatccaaatgagtggccgtgctggtcgccgaggtattgatcagcgtggt
atctgtatattgatggtagatgagaaaatggaaccttcaactgccaaaatgatgctgaaa
ggaagtgctgatagtttgaacagtgcctttcatttgagctacaatatgttgttaaatcaa
atacgctgtgaagatggtgatcctgaaaagcttcttcggcactcattttaccaatttcaa
gctgatcgagctctccctgatcttgagaagcaagtcaaggagctggaactagagagaaat
tccatgattattgaggaggaagagaacctaaagagttattatgatctcttgcagcagtac
aaaaatctaaagaaggatgtccgcgatattgttcattctcctaaatatgttctacctttc
ttgcaaccaggaaggcttgctcgcgttcagtacagtactgatgagcaatccaccttctct
attgatgaaaacatcacttggggagttacaataaacttcgaaaaggtgaaaacccatagt
gaagataggaggcctgaggattctgattacacagttgatgttctcacaagatgttctgta
agtaaggacaaaagtggaaagaagacaatgaagattattcctctgaaagaccgtggagaa
ccggttgtcatttccttgccactttctcagattgatggactaagcagcattcggatgcac
ataccaaaggatcttttgcctgtagaagctcgagaaaacacattgaggaaagttgatgaa
gttatttccaggtttgctaaagatgggatccctttattggatccagaagaggatatgaaa
gtacaatcaagctctttccggaaagcttccagaagaatagaagctcttgaaagtttattt
gagaagcacgatgtccacaattctccacatattaaacaaaagctaaaagtgttgcatgct
aaacaagaattatcagccaaaataaaggccattaaaaaaacaatgcggtcttcaactgct
ttagccttcaaagatgagctcaaggcccgaaaacgggttcttcgtagactgggatatatt
acaagtgaggatgttgtggaagtgaagggcaaagtagcatgcgagataagttctgctgat
gagctaacattgacagagcttatgtttagcggcactctgaaggatgctacagtagaacag
atggtagcgctgctttcttgctttgtttggcaggaaaagcttcaggatgccccaaagcca
agggaggagctcgacttgctgttcttccagttgcaggagacagctagaagggttgctaac
cttcagcttgaatgcaagatccaaattgacgtggagagttttgtgaactctttccggcct
gatataatggaagcggtgtattcatgggccaaaggatccaaattctatcaaatcatggag
atgacccaagtatttgagggcagcttgatcagggctatcaggaggcttgaggaggtcctg
caacagctaattctggcatcgaagtccatcggtgaaacccaattggaagcaaaacttgag
gaggctgtcagtaagatcaagagggatatagtgtttgcagcatctttatacctgtaa
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