Oryza glaberrima (African rice): 127760057
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Entry
127760057 CDS
T08853
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
127760057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127760057
Enzymes [BR:
ogl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
127760057
DNA repair and recombination proteins [BR:
ogl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
127760057
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Rho_N
Exo_endo_phos_2
F-box
F-box-like
Motif
Other DBs
NCBI-GeneID:
127760057
NCBI-ProteinID:
XP_052140229
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Position
1:31100869..31108074
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AA seq
755 aa
AA seq
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MLACAAVEADGSVSRARKRPRIGVSAEPARPTAPMLGSEPPWLVLRLVGPFLDAESLAAA
SCVSTACREAFTAEDLWSKLLRSQYPSALGLLPMQGNGDDASGRSSSPYRRLFALFRSAS
ARRRALPPPRLALDDVTFAIDIFAASGENTLSFVVAARDAIAKTGRFQFEVDLTGRNAEV
GRGEFWSVRWTALRAGLIGFAPLAVEMMDAKAPAARARALFGGATGETWATGCLPAPGCS
GATVEAEVVFEVSGEERLLEKVRFGVMAQCRCGCGLPSANFSPSKLALIRLSLMMAETRA
TYSRRAASKNTDIKKDDEHVLEKEDVAESKLEIEQLRNDPDRLQSMTVKELREITRMMGI
PVKGNKKDLVSALMDSLGKVGTSSVEKIGVSEVPSKRKGASVVVEQNIESSEVISETPSK
RSRAKNKGTAEESSGANVKQSKTSVQKKKLVVQGASVDHEEPWTVLVHKKPQPAWIPYNP
KVMRSPSLSKDTKALKILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDV
EVIKEGLLEGYTHSFWTCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFN
DFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHD
PAGNRRSAGFTIEERESFETNFLSKGFVDTFRKQHPNVVGYSYWGYRHNARKTNKGWRLD
YFLVSESIAERVHDSYIIPDISASDHSPLGLVLKL
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcttgcgcggcggtggaagctgacggctcggtctcgcgtgcgcggaaaaggccg
cgcattggcgtgagcgcggagcccgcgcggccgacggcgccaatgctgggatctgaacct
ccgtggttggtgctccggctggtgggtcccttcctcgacgccgagtcgctcgcggcggcc
tcctgcgtctccaccgcctgccgcgaggccttcaccgccgaggacctctggtccaagctc
ttgcgctcccagtacccatccgctctcggcctccttcccatgcagggcaatggcgacgac
gccagcggccggagctcgtcgccgtaccgccgcctgttcgcgctgttccggtccgcctcc
gcccgccgccgcgcgctcccgccaccgcgcctcgccctcgacgatgtcaccttcgccatc
gacatcttcgcggccagcggcgagaacaccctctcgttcgtcgtcgccgcccgcgacgcc
atcgccaagaccggccgtttccagttcgaggtcgacctgaccggccggaacgcggaggtc
gggcggggggagttctggagcgtccggtggacggctttgcgggcggggctgatcgggttt
gcccccttggcggtcgagatgatggacgcgaaggccccggcggcgagggcgcgcgcgctg
ttcggtggcgcgacgggggagacctgggccacggggtgtctcccggcgcctggctgcagc
ggcgcgacggtggaagcggaggtggtgttcgaggtgtccggcgaggagaggctgttggag
aaggtgaggttcggtgtgatggcgcagtgtaggtgtggctgtgggcttccaagcgcaaat
ttcagtcccagcaaactagcactgataagactaagcttgatgatggcagaaacacgagcc
acctattcgcgtcgagctgcctctaagaatactgatatcaagaaagatgatgaacatgtc
cttgaaaaggaggatgttgctgaaagcaaattggagatagagcaacttaggaatgacccc
gatcgactccaatccatgacagtgaaggagctcagggaaatcacgaggatgatgggaatt
cctgtaaaaggcaacaagaaagatttggtatcagccctgatggattctctgggtaaagtg
ggaacttcatcagttgagaagattggtgtgtctgaagtaccttcaaaaagaaaaggtgct
tcagtagtagttgaacaaaacatagaaagttctgaggtcatttctgaaactcctagtaag
agaagtagagcaaagaacaaaggaaccgctgaggagagttctggggctaatgtcaagcaa
agcaagacatcagtccagaagaaaaagctagttgtccaaggtgccagtgtggaccatgaa
gaaccttggactgtacttgtacacaagaaaccacaacctgcctggattccttataatcct
aaggtcatgaggtctccatctcttagcaaggatacgaaggctctaaagattctgtcatgg
aatgtgaatggattaaaagctttactcaaatcgaggggcttctctattcatcagttagct
cagagggaggacttcgatatactatgcctacaagagacaaaaatgcaggagaaggatgta
gaagtcattaaggaaggtctacttgaaggctatacccatagtttctggacatgcagtgta
tcaaagcttggctattcggggactgcaataatttcaagggtgaaaccactctctatcaag
tacgggcttggtgtgccagaccatgatactgaagggagggtcgtcacagtggagttcaat
gatttttacctcctgactgcttatgtaccaaattctggtgatggtctaaaaagattgact
tacagggtcacagaatgggatccaagccttggtaactacatgaaagacttggaaaaatcg
aagcctgttatactaactggtgatcttaactgtgcccatcaagagattgatatacatgat
cctgctggaaatcgtagaagtgcaggctttacaattgaagaaagggaatcattcgagact
aattttttgtccaaaggttttgttgatacatttcgaaaacagcatcccaatgttgttgga
tatagttactggggttataggcataatgcccggaagaccaacaaaggttggcgtctggat
tattttcttgtgtctgaatccattgcagaaagagtccatgattcatacattattccagac
atatctgccagtgatcacagcccgctaggcctcgtactgaagctctag
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