Oryza glaberrima (African rice): 127771204 Help Entry 127771204         CDS       T08853                                  Name (RefSeq) putative DNA ligase 4   KO K10777   DNA ligase 4 [EC:6.5.1.1] Organism ogl  Oryza glaberrima (African rice) Pathway ogl03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:ogl00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     127771204  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:ogl03400]     127771204 Enzymes [BR:ogl01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      127771204 DNA repair and recombination proteins [BR:ogl03400]  Eukaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     DNA Ligase 4 complex      127771204 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C PTCB-BRCT BRCT DNA_ligase_IV RNA_ligase mRNA_cap_enzyme Motif Other DBs NCBI-GeneID:  127771204 NCBI-ProteinID:  XP_052153009 LinkDB All DBs Position 4:complement(26981267..26990571) Genome browser AA seq 1296 aa AA seqDB search MAATVRFGLLVAMFQAMSRDRTAAKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRE RGSYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGGGFRNAGNFALVAAEVLQRRQGM TSGGLTIKEVNDALDRLAATENRSEKASILSSLIKKTNALEMKWLLMIILKDLKLGISEK SVFHEFHPDAEDLFNVTCDLRLVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVNNASSAW KKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYAPGMSKVIIENILVDRCIL DGEMLVWDTVLNRFAEFGSNQEIAKAAKEGLETDRQLCYVAFDILYAGDTSVIHQSLTER HEILRKVVRPLKGHLEILVPTGGLNIHRPPDEPCWSILAHSLDDVEKFFKDTVDNREEGI ILKDLESKWEPGDRSGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVP SDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPPRFYEVTNHSKERPD VWIESPDKSVIISITSDIRTIKSEVFAAPYSLRFPRIQRLRYDKPWHECLDVQAFVDIVH SSNGTTHRAADDDNDLKNVKVKQPRTNKKGEKKNVSIIPSHLMKTDISGLKGETLIFANT MFYFVNIPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAATRQGRIIHY SWILDCCKEKRLLHLQPKYILFLADFARHKFPEEIDSYADYFYWDIDISDLKQIFSNMDR AVVDSNMVHHYKKKYCADERFCFFQGCCVYFYHAPLVNADYNVISDLALKRVKQDLTMHG GQVCSILAPATHLIIVSVLQAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQT RLPETTYSLKPDTLEEIEIERSEETVQPCNDKLEENEKADTSHVKHASRKRGRPSSSASR TAKPAPRPVRRTRARRGNQHAKIDDVEPEESDHGETGLDDQIPDTDNISKMEVDSFDKDQ VSARPVRRTRARRGKQHAKIDYGQSEESDPGETGQDDQRLDADYISKMEEDSSDRDQGAH PAAPRVVRRSRAQRGKWLAKIDRETGPGETGQDDKKLNADSISKMEEHAHDKDQEPPPGA QLITLDEQEPKGIKSSTTETPSSPKHERNQTVLRRDTAETTSSATCEKMEQMVDPLHAML LDMIPSLGQMKTDVGNRVAEAKAETNPPWVGSSTSSYVAPVPQASASSASSSGVPAPHAG SSTQSTGVPAPDPTAGAPKKKKVSYKDVAGALLKDW NT seq 3891 nt NT seq  +upstreamnt  +downstreamnt atggcggcgacggtgcggttcgggctgctggtggcgatgttccaggccatgtcgcgggac cgcacggcggcgaagaagcgggcgcggctccgcgcgctcctcgaccgcgcctacgggccc ggcggcagggacgactacttcagcgcgctccgcctcgtgctcccggggctcgaccgcgag cgcggctcgtacgggctcaaggaggccgcgctcgcctccgtcctcgtcgacgccctcggg atagccaaggactcgcccgacgccgtgcggctcaccaactggcggcgcgggggcggcttc cgcaacgccggcaacttcgcactcgtcgccgctgaggtgctacagcggagacaaggaatg acttctgggggattaacaataaaagaggtgaatgacgcacttgatcgcctggctgcaact gagaataggtctgagaaggcttcgattctttctagtctgatcaagaaaaccaatgccctt gaaatgaagtggctcttgatgattattctgaaagatttgaaattggggatcagtgagaag agcgtatttcatgagttccatcctgatgctgaagacttgttcaatgtcacttgtgacctg agattggtctgtgaaaagcttaatgatcgaagtcagaggcataagcgccaggatatagaa gtggggaaggctgtcaggcctcagctagctatgagagtcaataatgcctcatctgcttgg aagaagcttcacggaaaacaagtggttgctgagtgcaaatttgacggtgaccgtattcaa attcacaagaatggggaagagattcatttcttctcaaggagctttcttgatcactcagaa tatgcacctggaatgtccaaagttattatagaaaatatcttggttgacaggtgtattttg gatggagaaatgcttgtttgggatactgtgcttaatcggtttgcagaatttggatcaaac caggaaatagcaaaggccgcaaaggaggggctggagactgatcgacagttgtgctatgtt gcttttgacattctttatgctggagacaccagtgttatccaccaaagtttgacagagcgg catgaaattctgcggaaggttgtcagacctttgaagggccatctggaaatattagttcca acaggtggcctgaacatccatcgtccgccagatgaaccatgctggtccattttggcacat agtcttgatgatgtggagaaattcttcaaggacactgttgataatagagaagagggaatt atactaaaggaccttgagtccaaatgggaacctggtgaccggagtggaaagtggcttaaa ttaaagcctgattatatacatgctggtgctgatcttgatgttattattataggtgggtat tatggctcaggacgtcgaggaggagaggttgcccagtttttagttggtcttgcagtgcct tctgacgacaatagttatcccaaaagatttctttctttttgccgagtcggtactggtctt tctgatgaagagcttgacgctcttgtcaccaaattgaagcctcatttcaggaaaaatgag taccccaaaaaaccaccaagattttatgaagtgacaaaccattcaaaggagaggccagat gtttggatagaaagccctgataagtcagtcataatatccataacaagcgatattcgaaca atcaaatctgaggtatttgctgccccatacagcttaaggttcccccgcattcaacggttg agatacgataagccatggcacgagtgccttgatgtgcaggcatttgtggacatcgtacat tcaagtaatgggacaactcacagggcggcagatgatgataatgatctgaagaatgttaag gtaaaacaaccgagaacaaacaaaaagggggagaaaaagaatgtgtcaatcatcccttca catcttatgaagactgacatctcaggcctaaagggagaaacacttatatttgcaaataca atgttttattttgtcaacatacctccatcatataatctcgactattttcataaactggtt gtggagaatggcggatctttctcgatgaatcttaatgactcagttactcattgcatagca gcggagaaaaaaggtatcaaatatcaggcagccacacggcagggaaggatcattcattat tcctggatcttagactgttgcaaggaaaaacgccttcttcatttgcagcctaagtatatc ctctttcttgcagattttgcgaggcacaaatttcctgaagagatcgactcatatgccgac tatttctactgggacattgatatttctgacctcaagcagattttcagcaatatggacaga gctgttgttgattcaaacatggtacaccactacaaaaagaagtattgcgcagatgagaga ttctgcttcttccagggttgctgtgtctacttctatcatgcacccttggtgaatgcggac tacaatgtaatatctgatcttgcactcaagagagtgaagcaggaccttaccatgcatggt ggtcaagtttgcagcattcttgctcccgctactcatttgattatagtttcagttctacaa gcctacaattttgacatgctgtacaagagcctccctcctgccgagaggcgttatctacat gacaaaagattgcaggttgtcagtaacaagtggttggaagattcagtggaaaaacaaaca aggctgcctgaaaccacttacagccttaaaccggatacactagaagaaatagaaattgaa cgaagtgaggaaactgttcagccttgtaatgacaagcttgaggaaaatgagaaggctgat acatctcatgttaagcatgcatcaaggaaaaggggaaggccatccagtagtgcctcaaga actgcaaagcctgctcctagaccagtccgaagaacaagagctagaagaggaaatcaacat gcaaaaatagatgatgttgagcctgaagaaagtgaccatggtgaaacaggtctagatgat caaataccagacacagataacatctctaaaatggaagtagatagctttgacaaagaccaa gtttctgctagaccagtccgaagaacaagggctaggagaggaaaacagcatgccaaaatc gattatggtcaatctgaagaaagtgatcctggtgaaacaggacaggacgatcaaaggttg gatgcagattacatctctaagatggaagaagatagcagtgacagagaccagggggcacat ccagccgctcctagagtggtccgaagatcaagggctcaaagaggaaagtggcttgcaaag atagatcgtgaaacaggtcctggtgaaacaggtcaagatgataagaagttgaacgcagat tccatctctaagatggaagaacatgcccatgacaaggatcaagaaccacctccaggtgcc cagcttatcacattggatgagcaggagcccaaaggaatcaaatcgagtaccacggagaca ccaagcagcccaaaacacgaacgcaaccaaacagttcttagaagagacaccgctgaaaca acgagtagcgcaacgtgcgagaagatggaacagatggttgatccgctgcacgcaatgctc ctggacatgattccatcgcttggccagatgaagacggacgttggtaacagggttgccgaa gccaaagctgagacgaatccaccttgggtaggaagctccacatccagttacgtggctcca gtgccacaggcctcagcgagttctgcatccagttctggtgttccggcaccacacgcagga agctccacacagagtaccggggttccagccccagatccaactgctggtgctccaaagaag aaaaaggtcagttacaaggacgtcgccggtgcacttctgaaggattggtga

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