Oryza glaberrima (African rice): 127772063
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Entry
127772063 CDS
T08853
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
ogl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127772063
09124 Replication and repair
03420 Nucleotide excision repair
127772063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127772063
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127772063
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127772063
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127772063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
127772063
NCBI-ProteinID:
XP_052154004
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All DBs
Position
4:30781375..30786862
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AA seq
453 aa
AA seq
DB search
MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA
AAMEEWVLDEYAAKHRVAIDRLLQLRVFVETMFFYRRKEVSYKMNQKFQGNMQKYLVDGG
SLPREPIPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGL
LSSRDGEAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTL
GEAYSLNTLTDVQRNAIRDLAELGLVKLQQGRKDSWFIPTKLATNLSASLSDSSSNKEGF
VVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIIS
FLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMILSHLYEDFPSKDMFDQCCDYAR
DHGCLLWEDAKKMRLIVRVEFHSEMREFLRRLR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaatggtggtcgcgcggaacttcatggacatggtggccgcgctgccggcc
gccaagctcgacatgctctacgactccgccttcatctgcgaggccgtgctcaggtcgctc
ccgccgctcgcgaagaagtacgcgctgcagatgctgtacgtgtcggcgccggtggccgct
gcggccatggaggagtgggtgctcgacgagtacgccgccaagcacagggtcgccatcgat
aggctgctccaactgagggtatttgtcgagactatgtttttctacagaagaaaggaggtg
agctacaagatgaaccagaagttccagggcaacatgcaaaagtatttggttgatggtgga
agtttaccaagggaacctataccatcgagtgtcactgcaaggttgcctacattggcagaa
ttagagtcttttgctcttgagcagtgggagtgcttcttgctgcaattgatcaactcatct
caagtcgagagagggacaagtttcagctcatccatgatgagaacttttcagcgaggtctt
ctgagttcaagagatggtgaagctccaagattaactgagaacgggttccagtttctgctg
atggagacaaatgctcaactttggtacatcatgagagaatacatctcatcagcagaggaa
cgtggtgtggaccccacggagttgatatcatttctattggaacttagttttcatacatta
ggagaggcttatagcttgaatactctgaccgatgtccaaagaaatgctattagggatctg
gcggagttgggactggtcaaacttcagcagggtcgaaaggacagctggttcatacctaca
aaactggctacaaatctctcagcaagcttgtcagattcgtcgtctaacaaagagggtttt
gtagttgtggagacaaatttccggatgtatgcgtactcaacttccagattacattgtgaa
attctgcgccttttttcaagagtggagtatcaacttccaaacctaattgtgggatctatt
acaaaagaaagtctttatggtgcttttgagaatgggattaccgctgaacagataatttca
ttccttcagcagaatgctcatcctcgtgttgctgacaagattcctgcagttccagagaac
gttacagatcagattaggttgtgggaaacggatcgtaacagggttgatatgatcctatcg
catttatatgaagattttccaagcaaggatatgtttgatcaatgctgtgattatgcaaga
gatcatgggtgcttgctgtgggaggatgcgaagaagatgagattaattgtacgagtggag
ttccattcagaaatgcgtgagttcctccggaggctaagataa
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