Oryza glaberrima (African rice): 127772192
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Entry
127772192 CDS
T08853
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03022
Basal transcription factors
ogl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127772192
09124 Replication and repair
03420 Nucleotide excision repair
127772192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127772192
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127772192
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127772192
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127772192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
Castor1_N
Motif
Other DBs
NCBI-GeneID:
127772192
NCBI-ProteinID:
XP_052154156
LinkDB
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Position
4:complement(22379520..22383165)
Genome browser
AA seq
433 aa
AA seq
DB search
MYGVGGGGGGFNAPYTASARRRNHEDDEEEEEEEESGEGRVLEAWERAYADDRSWEALQE
DESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIRYLYIVIDLSRAASEMDYRP
SRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIKALMGKLECS
GESSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKKSKIRCSVIG
LAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGA
EDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVQ
PFDEVSSVHPNRLGQKGGQKCYGCQQSFINPDSQSSLHVRCPKCNQHFCLDCDIYIHESL
HNCPGCESQRSSS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggcggcggcggcttcaacgcaccctacacggcatcggcccgg
cggcgcaaccacgaggacgacgaggaggaggaggaggaggaggagtccggcgaggggcgc
gtcctcgaggcctgggagcgcgcgtacgcggacgaccggtcatgggaggcgctgcaggag
gacgagtcgggcctcctccgcccgatcgacaccaagaccctcgtccacgcgcagtaccgc
cgccgccttctcctccgctctgccgcctccgccgccgcccgcatccagaagggcctcatc
cgctacctctacatcgtcatcgatctctcccgggcagcttcagagatggattatcgacct
agtcgaatggctgttgttgcaaaatatgctgaggtattcataagggaattttttgaccag
aatcccttgagtcatgtggggatagtgacaatgaaagatgggatttcccatcgacttaca
gagattggaggtagtccagaatcacagattaaagcattgatggggaagcttgagtgttct
ggtgaatcatctctgcagaatgctctagagcttgtccatggttatttagaccaggttcct
tcatatggtcacaaggaagtattatttttgtactcggccctgaatacctgtgatcctgga
gatatcatggagacaatagcaaaatgcaagaaatccaaaatacgatgttcggttattggg
cttgctgcagagatttttatctgcaaatatctgtgtgaagagactggcggatcctacaca
gttgcactggatgagtcccatttcaaggaattgcttctggaacatgctcctccaccacct
gcaattgctgagtatgctgcagctaatttgattaagatgggttttccgcagagaggagca
gaggatcttatctccatctgctcttgtcacaagaaaataaagtcgggggctgaaggttac
atatgtcctagatgcaaagtcaatgtatgtgagcttccaacagaatgtcgaacttgcggg
ctgacactagttagctctccacatctggcaaggtcctatcatcatctcttccctgtacaa
ccatttgatgaggtgtcctccgtgcacccaaatagactaggtcaaaagggaggacaaaag
tgttacggctgccagcaaagctttattaaccctgatagtcaatctagcctccatgttcgc
tgtccaaaatgcaaccaacacttctgccttgattgcgacatttacatccatgagagcttg
cacaattgcccaggttgcgagagtcagcgtagttcttcatag
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