Oryza glaberrima (African rice): 127779628
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Entry
127779628 CDS
T08853
Name
(RefSeq) endo-1,4-beta-xylanase 1-like isoform X1
Organism
ogl
Oryza glaberrima (African rice)
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Gene cluster
GFIT
Motif
Pfam:
CBM_4_9
Glyco_hydro_10
bpX6
Motif
Other DBs
NCBI-GeneID:
127779628
NCBI-ProteinID:
XP_052162413
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Position
7:14154598..14160732
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AA seq
1169 aa
AA seq
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MNTYRSVPFAGTLHRNTFCSERRKGGSTTCQVHGKQKRDGQLHSTHSTVQFTHLPHLGES
RRFRFDRFAFPGVGQTAFTSSTRRRLSFSSPPRHSPPAAGLLREEVEEHGASDKVVMENI
LSNNDFSEGLHLWHPNGCHGFVAVEGSGYHHGIRPHSGSNYAVLTRRTHNWQGLEQDITE
KVTVGTEYIVAAHVRVHGELNEPVGIQATLKLEGDGSSTNYQSVARISASKDCWEKLEGS
FELKTLPRRLVFYIEGPPPGVDLLIDSVTISYKKTERAASKLVSGTENIISNYDFSEGLH
LWNPICCHAYVASQWSGFLDGIRGSSGENYAVVSKRTESWQGLEQDITDKVSAGTAYAVS
AYVRVDGNIHTKVEVKATLRLHNTDDSTHYSPVGSLLASKEKWEKMEGSFCLTNMPKRVV
FYLEGPPAGVDLIIDSVNITCSGYQQLKEVKVPSGVDTIVKNPHFDEGLNNWSGRGCNIC
RHELTAYGNVKPLNGSYFASATGRVHNWNGIQQDITGRVQRKVLYEISSAVRIFGSANDT
EVRVTLWVQEYGRERYVSLAKNPASDKQWTHLKGKFLLHAPFSKAVIFVEGPPAGIDILV
DGLVLSPARKLHAAPRPRIENVSYGANVIHNSAFSHGLSGWSPMGSCRLSIHTESPHMLS
AILKDPSAKQHIRGSYILATNRTDVWMGPSQLITDKLRLHTTYRVSAWVRAGSGGHGRYH
VNVCLAVDHQWVNGGQVEADGDQWYELKGAFKLEKKPSKVTAYVQGPPPGVDLRVMGFQI
YAVDRKARFEYLKEKTDKVRKRDVILKFQGSDAANLFGSSIKIQQTENSFPFGSCIGRSN
IENEDLADFFVKNFNWAVFENELKWYWTEAEQGRLNYKDSDELLEFCRKHNIQVRGHCLF
WEVEDSVQPWIRSLHGHHLMAAIQNRLQSLLSRYKGQFKHHDVNNEMLHGSFYQDRLGND
IRAHMFREAHKLDPSAVLFVNDYNVEDRCDSKSTPEKLIEQIVDLQERGAPVGGIGLQGH
ITHPVGDIICDSLDKLSILGLPIWITELDVTAENEHIRADDLEVYLREAFAHPSVEGIIL
WGFWELFMFREHAHLVDVDGTINEAGKRYIALKQEWLTSITGNVDHHGELKFRGYHGSYT
VEVATPSGKVTRSFVVDKDNAVQVVTLNI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgtacaggtctgtaccttttgccggtactttgcacaggaacacattttgctca
gaaagaaggaaaggtggtagtactacgtgtcaggtccatggaaaacaaaaaagggatggt
caactccactccactcactccacggtccaatttacgcacctcccccacctcggcgagtcg
cgacgcttccgattcgatcggttcgcgttccccggcgtcggacagacagccttcacgtcg
tctacacgtcgacgcctcagcttctcctccccaccccgccactccccgccggccgccggt
cttctccgcgaggaagtagaggagcacggcgcttccgataaagttgtcatggagaacatt
ctgtcaaacaatgatttttcggaaggtctacatttgtggcatcctaatggttgccatgga
tttgtggctgttgaaggatcaggttatcatcatggaataaggcctcactcagggtcaaat
tatgccgtacttactcgtcgcacacataattggcaagggcttgagcaggacataacagaa
aaggtcactgttggtactgagtacattgttgctgcccatgtcagagtccatggtgaactc
aatgagcctgttggaattcaggccactctaaaacttgagggcgatggttcttctacgaac
tatcaatcagttgcaaggatctcagcatcaaaagactgttgggagaagttggaaggttca
tttgaactaaaaactctaccaagacgtttggtattctacattgaaggcccccctcctggt
gtagacttgctcatagattcagtcaccatctcctacaagaaaacagagcgggctgcatcc
aaactggttagtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcat
ttgtggaaccctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgat
ggtattagagggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctgg
caaggtcttgaacaagatattacagataaagtatctgctggtactgcttatgcagtatca
gcctatgttagagttgatgggaatatccatacgaaagttgaagttaaagcaaccttgagg
ttgcataacacagatgattcaacacactacagtccagttggaagcctgttagcttcaaaa
gaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgtgtagta
ttctacctggaaggacctcctgctggcgtggaccttatcattgattccgtaaatataact
tgctctggatatcagcagttaaaagaagtaaaagtaccaagtggagttgataccatcgtt
aagaatcctcactttgacgaagggttaaacaattggtctggaagaggatgcaatatctgt
aggcatgagcttactgcttatggaaatgtcaagcctctaaatggcagctattttgcttca
gccactggacgggtccacaattggaacggtatccagcaagatatcactggcagggtacag
agaaaagttctttatgagataagttctgctgtccgcatatttgggagtgccaatgataca
gaagtccgcgttactctgtgggtacaagaatatggccgtgagcgatatgtaagccttgca
aagaacccggcatctgataagcaatggacacatctaaaaggaaagttcctcctccatgcc
ccgttttcaaaagctgttattttcgtagaggggccacctgcaggcattgatattcttgtt
gatggccttgtcctatctccagcaagaaaactccatgctgcaccccgcccaagaattgag
aatgtttcatatggagctaatgtaatacataacagtgctttcagtcatgggctttctggg
tggagtcccatggggtcatgtcgattgagtatccatactgaatcaccccatatgctttct
gccatcttgaaggacccctcagctaagcaacatataagaggttcttatattcttgccaca
aaccgcactgatgtgtggatgggcccttcccagttgataactgacaagcttaggctgcac
accacttacagagtttctgcttgggtacgtgctgggtctggaggacatggacgttaccat
gtaaatgtttgtcttgctgtagatcatcagtgggttaatggtgggcaagtagaagctgat
ggcgatcaatggtatgaactcaaaggagcattcaagcttgaaaagaagccatccaaagtt
actgcatatgttcagggaccgcctccaggtgttgatctcagagttatggggttccaaatt
tatgctgttgatagaaaagcacgttttgaatatctgaaggagaaaactgacaaggtaagg
aagcgtgatgtcatcctgaagttccagggatcagatgctgcaaacctttttggttcatct
atcaagatacaacagaccgagaacagttttccatttggatcatgcatagggagaagtaac
attgagaatgaggatcttgctgatttcttcgtgaagaactttaattgggctgtatttgaa
aatgaactgaagtggtactggacagaggctgaacaagggagactaaattataaagattct
gatgagttgcttgaattttgccggaaacataacattcaagttcgtggtcactgcttattc
tgggaagtagaagattcagtccagccatggattcgatcattacatggtcaccacctgatg
gctgctatacagaatcgtttgcaaagtctgttgtcaaggtacaaaggtcagtttaaacat
catgatgtaaacaacgagatgcttcatgggtctttctaccaagatagactgggaaatgat
attagagctcacatgtttagggaagcacataaacttgacccttcagcagtactctttgtg
aacgactacaatgttgaagatcgatgcgactcaaaatctacaccagaaaaattaattgaa
cagattgttgatctccaagaaaggggtgctccagttggtgggattggcttgcaaggccat
atcacgcatccagtgggtgacatcatctgcgattccctggacaagctctccatactgggt
ctccctatctggatcaccgaattggatgtcacggctgagaatgaacacatccgagccgat
gatctggaggtgtaccttcgcgaagcctttgcgcatccttccgtggaggggattatcctt
tggggattctgggagctgttcatgttccgagaacacgctcacctggttgatgttgatgga
acgatcaatgaggctggcaaaaggtacattgcactgaagcaagagtggctaaccagcatt
actggcaacgtggatcaccatggagagttgaagttcagaggctaccatgggtcatacacg
gtagaagtagcaacgccttcaggaaaggtaaccagatcgtttgttgttgacaaggataac
gctgttcaggtggttaccctgaacatttag
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