Oryza glaberrima (African rice): 127781959
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Entry
127781959 CDS
T08853
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127781959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127781959
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127781959
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127781959
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127781959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
127781959
NCBI-ProteinID:
XP_052164990
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All DBs
Position
8:complement(4120941..4130494)
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AA seq
971 aa
AA seq
DB search
MAAAAAAVAGAGGVGHVVERFRARLREEEEEEGGGGEAAAAAVVRVYVEVLSELTFNCKP
IITELTIIAGQHAALAARGIADAICARIAEVSADQKLPSLYLLDSIVKNIGREYVGHFAA
RLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRSATATDI
RQSESISPRLSHGIHVNPKYLEAQQQFKQSTSVHQPITRGNRQMNDVEEDQINGLTSKSS
QGWPATNSKLQKSTMLYADDLDQQEAFRSHTGLIRPSSPHLLSKHPSILNTEGPLANSRR
TMSRSPPLDVLPRNASPKRALERPPLSHSVLGPDPRRLPDRNGWFERKWAFEDGAQRPSM
SILDEEYRKQSARELIDAYGNSQGKDVDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYT
WEDMSPTLTDRNRTSVPSLPPLGTLRAGFLGPNSGLLESDIVRHSWPGQAPRPAIDGPPL
NLEDRIPTNGPVDRTNNRRYPGNFGVQNGAFLDYQSSEHTLDPGRTTMPVPPWQQTIGQP
LRVQAPQPASILNRMPLPTDSEVPVKRLATGGTYDALNVDIPLLEKQRSSPAHAPMEWPL
NTQSLTIQPIPPDTKHPRGASDGLDSRPFISQGSSSSVFVPQHHALDRRTMNADDLAQPS
YQHPDLLSLSQQNQGTVLGNQGQPHHPPQFHPHPHSHLQETIRSFAPSMSVAPPQNIFHG
QGGSAAALLPSSFPVPPAVPPYGLQSMPGFPLPSLPSGPPPPSQIGPSSSQVGGPPLVSG
LLSNLMQHGIISLQPPSQPQDSVGVDFNVDLKVRNESVINALYQDLPRQCKTCGLRFKCQ
EEHRAHMDWHVTKNRNSKNRKQTSRKYFVTVGEWLRAAETVGNDGVPSFEPAEPVADAKE
EKELAVPADEDQTTCALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIGGLERSQLGPIV
HAKCLSGPNNT
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggcggttgcgggggcgggcggggtggggcacgtggtggagagg
ttcagggcgaggctgcgggaggaggaggaggaggaggggggaggcggggaggcggcggcg
gcggcggtggtgcgggtgtacgtggaggtgctctcggagctcacgttcaactgcaagccc
atcatcaccgagctcaccatcatcgccgggcagcacgcggccctcgccgcgagggggatc
gccgacgccatctgcgcccgcatcgcggaggtgtctgccgaccagaaattaccatctttg
tatctgctagacagtattgtgaagaacataggacgagaatatgtagggcattttgccgct
aggttgcagaaggtattttgtgatgcctataggaaagttcaccgcaatcagcatgctgca
atgcgacacctctttggtacctggtcacaagtgttcccttcctctgtgctacgcggaatt
gaggatgagcttcagttttcccccttagagaataagcgctctgccacagcgactgatatc
cgacagtcagagtcgatatctcctagactgtctcatggcattcatgtaaatccaaaatat
ttagaagcacaacaacaatttaagcagtcaacttcggtgcatcaaccaataactcgtgga
aatcggcaaatgaatgatgtggaagaggatcaaataaatggtttaacatctaaaagttca
caaggatggcctgcaactaattcaaagctccagaaatctactatgctgtatgctgacgat
cttgatcaacaagaggcatttcgttcacatactgggttgataaggccaagttcgccacat
cttttaagcaaacatccttccatactcaatacagaaggaccattagccaattcaagaaga
accatgtcaagatcaccacctcttgatgtgctccctagaaatgcatcccccaagagagct
ctggagaggccaccactatcgcattctgttctaggacctgaccccagaagattgcctgat
cgaaatggttggtttgaacggaagtgggcttttgaggatggtgcacaacggccttcgatg
agcatacttgatgaagaatatagaaagcaaagtgcaagggaacttattgatgcttatgga
aattctcaaggaaaagatgtcgatgaaaggcttcccaagatgcaacgtctagattcaaat
ggcatggcaggcagacctagtgcacaaaaatggctaacttcggaggaagaagagtatact
tgggaggatatgagtcctactttaactgatcgaaacagaaccagcgtgccctctttacct
ccccttggaaccctgagagctggatttcttgggccaaacagtggactactggaatctgat
attgtgaggcacagttggccaggccaggctcctcgaccagcaattgatgggccaccacta
aatcttgaagatagaattcctactaacgggcccgttgacagaactaataacaggagatat
ccaggcaattttggtgttcagaatggagcctttttagattaccagagttctgaacatact
cttgatcctgggagaactaccatgccagttccaccttggcagcagactattggtcagccg
ttgcgggtacaagcgccccagcctgcatcaattctgaatagaatgccactgcctactgat
agtgaagtgccagtcaagaggttggccactggtggtacatatgatgcgctgaatgtagat
attccattgttggagaagcaaaggtcctcacctgctcatgctccaatggaatggcctctt
aatacacagtcactaactatacaaccaattccacctgataccaaacatcctagaggcgca
tcagatggtctagattctagaccatttattagccaagggtccagttcgtctgtttttgtt
ccacagcatcatgccttggatcggagaacaatgaatgctgatgatttagctcaaccatca
tatcagcatccagatttgttgtcattgagtcaacaaaatcagggcacagttttgggaaac
caaggtcaacctcatcacccgccgcaatttcatccccatcctcattctcaccttcaagag
acaattagaagctttgcccccagtatgtctgttgcacctccacaaaatatattccatgga
caaggaggtagcgcagctgcactcctgccaagttctttccctgtaccacctgcagtacca
ccctatggcttgcagtctatgcctggatttcctttgccatcgttaccttcaggaccacct
cctccatcgcagataggtccatcatcatcgcaagttgggggccctccacttgtctctgga
ttgttaagtaaccttatgcagcatggtataatctcattgcaaccacccagccaacctcag
gattctgtgggtgttgacttcaatgttgacctcaaggtacggaacgagtctgtcattaat
gctctgtatcaggatcttccgaggcaatgcaaaacttgtggccttcgttttaaatgccaa
gaagaacatcgtgctcacatggattggcatgttacgaaaaacagaaattcaaagaatcgt
aagcaaacttcacgtaaatattttgtcactgtgggtgaatggttaagagcagcagaaaca
gtaggaaacgatggtgttccttcttttgagcctgccgaaccagttgcagacgcaaaggaa
gagaaagaattggctgttcctgctgatgaggaccaaacaacatgtgctttatgtcaagag
ccatttgaagatttctacagtgatgaaactgaagagtggatgtacaaaggtgcagtttat
atgaatgcaccagatggaaatattggtggtctagaaaggtcgcagttgggacctattgtc
catgctaaatgtctatctgggccaaacaatacttag
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