Oryza glaberrima (African rice): 127786333 Help Entry 127786333         CDS       T08853                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism ogl  Oryza glaberrima (African rice) Pathway ogl03030   DNA replication ogl03410   Base excision repair ogl03420   Nucleotide excision repair ogl03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ogl00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     127786333    03410 Base excision repair     127786333    03420 Nucleotide excision repair     127786333    03430 Mismatch repair     127786333  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ogl03032]     127786333    03400 DNA repair and recombination proteins [BR:ogl03400]     127786333 Enzymes [BR:ogl01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      127786333     6.5.1.6  DNA ligase (ATP or NAD+)      127786333     6.5.1.7  DNA ligase (ATP, ADP or GTP)      127786333 DNA replication proteins [BR:ogl03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     127786333  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      127786333 DNA repair and recombination proteins [BR:ogl03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      127786333    NER (nucleotide excision repair)     Other NER factors      127786333    MMR (mismatch excision repair)     Other MMR factors      127786333 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase eIF-3c_N TrmB Motif Other DBs NCBI-GeneID:  127786333 NCBI-ProteinID:  XP_052169663 LinkDB All DBs Position 10:complement(18050988..18057699) Genome browser AA seq 916 aa AA seqDB search MFLLRATATSTSTAASAAAASLLLRCHHPLSPPPRTLALALPARPPPALLLPSRFRLSSS ASSSSRRRATGAASASAGAGAGKGKGKGGKSSGGKAAAAAAAGGAAMSASAGGGGGGGGK RTVADVLMGNARDAARKAKKGAAPSPKKLKTQPQPAAEADGGAVAKPEEKPHSPVKPKRS SSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRSPS PTKAKALASESQDIKKPSSPKKTKALDAPKSEEKDTTLELKKKGSEFNPMAAAYWSPEEP VPFLFLARALDLISNESGRIVITEILSNVFRTVIATTPEDLLATVYLSANRIAPPHEGTE LGIGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKASRLSQKMMYKPKPLTISHVLA KFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRLLQSKMRIGLAEKTVQMALGQA AVYSEKHSPPSKIQSPFEEAAKIIKQVYSVLPIYDKIVPAILEVGVWKLPEICSFSIGVP VGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIHCLEDGSVEIYSRNAERNTGKYP DVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQILSTRARKGVTISDIKVSVCTFG FDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLATSITSNDLEEIQKFLDTAVNSSC EGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGSFL LACYDEQNEEYQTICNIGTGFSEQQLEERSVSLRTKAIPKPKAYYRFADTMDPDVWFEPS EVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRLLRVRDDKNPEQATTSEQVADMYRA QKIYHANNNNDDEDDD NT seq 2751 nt NT seq  +upstreamnt  +downstreamnt atgttcctcctccgcgccaccgccacctccacctccaccgccgcctccgccgccgccgcc tcgctcctcctccgatgccaccacccgctctccccgccgcctagaaccctagccctcgcc ctccccgctcgccctccccccgccctcctcctcccctcccgcttccgcctctcctcctcc gcgtcctcctcctcccgacgccgcgcgaccggtgccgcatccgcatccgcgggcgcgggc gcggggaaggggaaggggaaggggggcaagtccagcggggggaaggcggcggccgcggcg gcggcggggggagcggccatgtcggcctcggcgggtgggggtggaggtgggggagggaag cggacggtggcggatgtgctgatggggaacgcgcgggacgcggcgaggaaggcgaagaag ggggcggcgccgtcgccgaagaagctgaagacgcagccccagcccgccgcggaggcggat ggcggcgcggtggcgaagccggaggagaagccgcattcgccggtgaagcccaagcggtcg tcctcgccgactaagtccaactcgccgggtgaggggaagaggtccgaatcggtggctgct ggcgcgaaaccggaggcgaaggagaagccctcgccgaagaagcctaaaaccctaggtgcc aaatccgacaccaagtcctccgcggaaggcgttgagaaggagaagaggaggtcaccatct ccgacgaaggcgaaagcgctagcttctgaatcccaggacataaagaagccctcctcacct aagaagaccaaagccttggatgcccccaagtctgaggaaaaggacaccacccttgagctc aaaaagaagggcagtgaattcaatcccatggctgctgcttattggagccccgaggagccc gtgccgttcctgttcctcgctcgggcacttgacctcatctctaatgagtctggaaggatt gttatcacggagatcctatcgaatgtcttccgcacggtgattgccacaacaccagaggat ctcctcgcgacagtatacctctcagccaaccggattgcgccgcctcatgaagggactgaa cttggaattggggatgcatcaattatccgtgcacttgcggaggcatacggccgcagagag gagcatgtcaagaagaacctaaaggagttgggcgatttggggcttgttgcaaaagcaagc aggttgtcacagaagatgatgtacaaaccgaaaccactgacgatctcacatgtacttgca aaattccggacaattgcaaaggaatcaggcaaagatagtcaagataagaaaagaaatcat atcaaaggacttctcgttgccgcaactgactgtgaacctcaatacattacacgactactt cagtcgaagatgaggattgggttagcagaaaaaaccgtccagatggctcttgggcaagct gctgtgtattctgaaaaacattctccaccgtcaaaaatccaatccccttttgaagaggct gcaaaaataattaaacaagtatattcagttcttccaatatacgataaaattgtcccagct attctagaagttggtgtttggaaacttccagagatatgcagtttttctattggtgttcct gttggtcctatgttggcaaaagcaacaaagtctgtctcagagatcatagacaaatttcag ggtcttgagtacacttgtgagtacaagtatgatggtgaacgggctcagatacattgcctg gaagatggatcagtagagatctatagtcgtaatgctgagaggaacactgggaagtatcct gatgttgttgatgcggtttctagattccggaagcctacagtcaaatcatttgtcttggac tgtgaaattgttgcttatgaccgtgaaaagaagaaaatattaccttttcagatacttagc acacgggcccgcaagggtgttaccataagtgatatcaaagtgtcagtctgtacttttggc tttgatattctttacatcaatggcaagcctcttctccaggaacaactgaaagttcgacga gagcatctttacaactcctttgaggaagtaccaggtgtttttcaattggcaacttcaatt acatcaaatgacctcgaggagatacaaaaatttctcgacacagctgtcaactccagttgt gaagggttgattatcaagacattggataaggatgctacatatgagccagcaaaacgatcg aacaattggttgaaattgaagaaagactacatggacagcattggagactctttggatttg gtgccaattgctgcctttcatgggagaggaaaacgtacaggtgtatatggatcattcctc ctggcatgttatgatgagcagaacgaagaataccaaacaatctgcaacataggcactgga ttttctgagcaacagcttgaggagcgttctgtgagccttcgaactaaagcaataccaaaa ccaaaggcatactataggtttgctgacacaatggacccagatgtgtggtttgagccttca gaggtttgggaggtgaaagctgctgatttgagcattagtcctgtgcatcgtgctgccaat ggtatagttgatccgaacaagggcatctccctaagatttcctcgcttgttacgtgttcgt gatgataaaaatccagaacaggcaaccacatctgagcaagttgctgatatgtaccgtgca caaaagatataccatgcgaacaacaataacgatgatgaggatgatgactag

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