Oncorhynchus gorbuscha (pink salmon): 123993542
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Entry
123993542 CDS
T07892
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123993542 (upf3b)
03015 mRNA surveillance pathway
123993542 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123993542 (upf3b)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123993542 (upf3b)
mRNA cycle factors
P-body specific factors
123993542 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
123993542
NCBI-ProteinID:
XP_046151760
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All DBs
Position
LG13:77196456..77204958
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AA seq
479 aa
AA seq
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MKEDKENTRPIEKIMEIKCEDAEKTEKPKPEKKEAMTKIIIRRLPPSITKEELEDQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRQRDEERRKWREEDRRKRKEAEKFKKGD
KTSEKDKDQAKEEPKIKLLRKPDRGDDVDVEKPKEKSKKPEKDKMKDDRGPGGSDMKKRQ
NHESREDRGSRKADEDGHKEGHRDGHKDFRERDIERYRDRERDRERERRQKEKERIRRQD
EDRRRRRERHDGENSYRKREDEGRKEKGDRVWEKRKGENAGDSVSHTSSHTDKPKKSEET
LREEKAKRDRLRNKDRPAIQLYQPGARNRGARGGGGGESHAGERKSESESKRSQEKGDE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggacaaggaaaacactcgtccgattgagaaaattatggagataaaatgcgaa
gatgctgaaaaaacggagaagccaaagccggagaagaaagaagcaatgacgaagatcatt
atccgacgtctgcctcctagcataaccaaggaggaactggaggatcaattgcagccactt
ccagaagtggactacctcgaatttttctccaatgacagcagcatgtacccccacgtcttc
gccagagcgtacatcaacttcaagaatcaggaagatattgtccttttcagagaccggttt
gatggatatgtgttcattgataatagagggcaggagtatccagccattgttgaatttgct
ccttttcaaaagattgccaaaaaaaggagtaagaaaaaggatgccaaaagtggaacaatc
gatgaagatgctgactacaagaaattcctggagatttataatggtgatgatgaaaagttt
acatccactcctgagactctactggaggaaatagaggctaaaacaaaggaactagtggct
aagaaaacgactcccctcttggacttcttgaagaacaaacagagaatccgtgaggaaaag
aaagaggagaggaggagacgagagctagaacggaagcgccagcgggatgaggaacgtcgg
aagtggagggaggaggacaggaggaagcgcaaagaagccgagaagtttaagaaaggggac
aaaacttcagagaaagataaagaccaggcaaaggaggagccaaaaatcaagctcctgaga
aaaccagaccggggagatgacgtggatgtggaaaagcctaaagagaagtcaaagaaacct
gagaaggacaagatgaaagacgacagaggtccagggggttctgatatgaagaagcgccaa
aaccatgaaagcagggaggataggggatcacggaaagctgatgaagatggacacaaagag
ggacatagagatggacacaaagacttcagagaacgagacatagaaagatacagggaccgt
gaacgagacagggagagggaacggcggcagaaagagaaggagcgcatcagacgacaggat
gaggatcgacgaaggaggagggaacggcacgacggagagaactcgtacagaaagcgagag
gacgaagggagaaaggagaaaggagatcgtgtctgggaaaagagaaagggcgagaatgca
ggagactctgtaagccatacttcaagccataccgataagcctaaaaagtcagaagaaacc
ctgagggaggagaaagctaaaagagatcgtttaagaaacaaggatcggcctgccattcag
ctttaccagccaggtgctaggaaccggggagctcgaggtggtggaggaggagaatctcat
gctggggagagaaagtcagagagtgagagcaagagatcccaagagaagggagatgaatga
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integrated database retrieval system
