Oncorhynchus gorbuscha (pink salmon): 123994217
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Entry
123994217 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
123994217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
123994217
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123994217
Spliceosome [BR:
ogo03041
]
Complex C
Other components
Complex C specific factors
123994217
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
123994217
NCBI-ProteinID:
XP_046152708
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Position
LG13:complement(99150093..99181982)
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AA seq
615 aa
AA seq
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METEHRTKKRSYGEEEKSGSDHPSEEDDYVPYVPVKIRKHQMQQKMLRLRGKVVEEEQKD
SGGEQRDEDEGLGPRSNVSLLDQHQVLKEKAEARKESAKEKQLKEEQKILQSVAEGRALM
SVKEMAKGIIYDDPIKTSWLAPRYILNMPPARHDRVRKKYHILVDGDGIPPPIKSFREMK
FPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFSLEQE
KKLPFCKSEGPYGLIICPSRELAKQTHTIIEYYCKLLEEEGAPHMRSVLCIGGMSVKDQM
EVVKHGVHMMVATPGRLMDLLQKKMISLDICRYLALDEADRMIDMGFEEDIRTIFSYFKG
QRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC
LQKTPPPVLMFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLV
ATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMD
LKALLIEAKXKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVT
NIGRKDYLAHSSMDF
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagacagaacaccggactaaaaagagatcctatggggaggaggagaagtccggatca
gatcatccatctgaagaggatgactatgtcccatacgtacctgtcaaaatcagaaagcat
caaatgcaacagaagatgctgcgtctgcgagggaaggtggtagaggaggagcagaaggat
agtggaggagagcagagagatgaggacgagggtctgggaccacgctctaacgtctccctg
ctggatcaacaccaggttctcaaggaaaaggccgaagctcgtaaagagtcagccaaggag
aagcagctgaaagaagaacagaagattctgcagagtgtggcagagggaagagctctcatg
tcggtgaaggaaatggccaaaggtatcatctatgacgatcccatcaaaacaagttggttg
gctccacggtacatcctgaacatgcccccagcgagacacgaccgcgtcaggaagaagtac
cacatcctggttgacggtgacggtatccctccgccgatcaagagcttcagggagatgaag
ttcccacaggccatcttgaaaggtctgaaaaagaaggggattgttcaccctacacccatt
caaatccagggaattccaaccattctctcaggccgggatatgatcggtatcgccttcaca
ggttcagggaagactctggtgttcaccctccccatcatcatgttctctctggagcaagag
aagaaactgcccttctgtaagagtgaagggccctacggtctcatcatctgtccctcaaga
gagttggctaaacagacccacaccatcatagaatactactgtaagctgctggaggaagaa
ggggctccacatatgagatcagtcctctgtataggaggcatgtctgtcaaagaccagatg
gaggtggtcaaacatggtgtccacatgatggtggcgacccccggccgtctgatggaccta
ctgcagaagaagatgatcagtctggatatctgtcgttatctggctctagacgaggctgac
cgaatgatagacatgggcttcgaagaagacatcagaactatcttctcctactttaagggc
cagagacaaactcttctgtttagtgcgaccatgcccaagaagatccagaactttgccaag
agtgccctggtcaaacccatcaccatcaacgtgggccgggccggcgctgccagcctggac
gtcattcaggaagtggagtatgtgaaggaagaggctaagatggtttacctgctggagtgt
ctacagaagacccctcctccggtgttgatgtttgctgagaagaaagcagacgtggacgcc
attcatgaatatctcctgctgaaaggagtggaggctgtggctatccacggaggaaaagac
caggaggagcgtaccaaggccatcgaggcctttaaggaagggaagaaggatgtgttggtg
gctactgatgtcgcgtctaaaggtctggacttccctgctatacagcacgtggtcaactat
gatatgccagaggagatagagaactatgtccacaggattggtcgaaccggtcgatcaggg
aagactgggatcgccaccactttcatcaacaaaggctgtgatgagtcggtgctgatggat
ctgaaggccctgctgatagaagccaagncaaaggttccccctgttctacaggtcctacag
acaggagacgagaccatgctggatatcggaggagagagaggctgtacattctgcggtggt
cttggtcatcgtatcacagactgtcccaaactggaagccatgcagaccaaacaggtcacc
aatatcggacggaaagactacctggcacacagctccatggacttctga
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