Oncorhynchus gorbuscha (pink salmon): 123997198
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Entry
123997198 CDS
T07892
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123997198
03015 mRNA surveillance pathway
123997198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123997198
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123997198
5.6.2.5 RNA 5'-3' helicase
123997198
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123997198
mRNA cycle factors
Common to processing body (P body) and stress granule
123997198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
ATPase
SLFN-g3_helicase
nSTAND3
Helicase_RecD
DEAD
AAA_16
AAA_22
UvrD_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
123997198
NCBI-ProteinID:
XP_046157300
LinkDB
All DBs
Position
LG15:43445169..43467913
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVNG
PNEGLHNGGVDDVAKASQILSELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVETTHDYQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYQLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLTNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSSFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSRPRRL
VNAINPGARFMSTAMYDAREALIPGSAYEAAQVRRPSNMYFQTHDQIGMIGTGPAHMAAM
NMPIPFNLVVPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHGSSGQANGH
NSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtacgggccgagttctcaaacgctcaccttcctggacactgaagaa
gcggagctacttggagcagatacccagggctcggagtacgagtttaccgattttacccta
cctagccagacacaaactcaaggccacacccagagtcagctggacaatcaggtgaatggt
cctaatgaagggcttcacaatggaggggttgatgatgttgccaaggcgagccaaattctc
tctgagttgaactttgaggaggatgaagaggacacctattacactaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcgtgtgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatcgtaaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagacgggccgttgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatacccgccaag
gccgactctgtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaaa
gacataaactgggacagttcccagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtaaagatcccctcggagcaggagcagctccgggcccgacagattaccgcccaa
cagatcaacaagctagaggagctctggaaggacaatccaacagccactctggaggatctg
gagaagcccggtgtagacgaggagcctcaacatgtgctgctgcgctacgaggatgcctac
cagtaccagaacatcttcggcccccttgtcaaactggaggcagactacgacaaaaagctt
aaagagtcccagacccaagataatataacggtcaggtgggacctggggctgaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaggga
gatgagatttgtctgcgctacaaaggagacctggctccactttggaaaggcatcggccat
gtcatcaaagtcccagacaactatggagatgagattgctatagaattgcgcagcagtgtc
ggagcacctgtggaaacaacccacgactaccaggtggatttcgtgtggaagtccacttcc
tttgacagaatgcagagtgccctgaagacctttgctgtggacgagacgtccgtgtcaggc
tacatctaccacaaactgctgggccacgaggtggaggatgtcatcatcaagtgtcagctg
cccaaacgcttcactgcccagggcctgcccgatctcaaccactctcaggtgtatgctgtg
aagactgtgctgcaaagacccctcagtcttatccaaggcccccccggcactgggaaaact
gtcacctctgccaccatagtgtaccagcttgccaggcagggcaacggacccgtgctggtg
tgtgctcccagtaacatcgcggtggaccagctgactgagaagatccacatgtcaggtctg
aaggtggtccggctgtgtgctaagagcagagaggccatcgactcccccgtctcattcctg
gcgctgcacaaccagatccgcaacatggacagtatgccagagctgcagaagctgcagcag
ctgaaggatgagaccggggagctgtcgtctgctgacgagaagcgttaccgggccctgaag
cgcaccgctgagcgagagctgctcacgaatgcggatgtgatctgctgtacctgtgtgggg
gcaggagatccacgcctggccaagatgcagtttcgctccatcttgattgatgagagcacc
caggccaccgagccagagtgcatggtgcctgtggtcctgggtgccaagcagctcattctg
gtgggagaccactgccagctgggcccagtagtgatgtgtaagaaggcagccaaagcaggc
ctgtcccagtctctgtttgagcgtctggtggtgctgggcatcaggcccattcgtctgcag
gtgcagtaccgtatgcacccggccctcagctctttcccctccaacatcttctacgagggc
tccctgcagaatggagtcactgctgctgaccgcatcaagaaaggctttgacttccagtgg
ccgcagccagacaagcccatgttcttctatgtaactcaaggccaggaggaaatagccagc
tctggaacttcctacctgaacagaactgaggcggccaacgtggagaagatcacaaccagg
ctgctgaaggctggggccaagcctgaccagataggcatcatcaccccctacgagggccag
aggtcctacctggtgcagtacatgcagttcagtggttccctccatacaaaactctaccag
gaggttgagatcgccagtgtggacgcgttccagggcagggagaaggactttatcatcctg
tcgtgcgtacgagccaacgagcaccagggcatcggcttcctcaatgacccgcgccgtctc
aacgtggccctcaccagagccaagtatggggtgatcattgtgggcaacccaaaggccctg
tccaagcagcctctgtggaaccaccttctcaactactacaaggagcagaaggttctggtg
gagggaccccttaacaacctgagagagagcctgatgcagttcagcaggccccgcaggctg
gtcaatgccatcaaccctggagcccggttcatgagcactgccatgtatgatgcccgtgag
gccctcatccctgggtctgcctacgaagcagcgcaggttagacgtccatccaacatgtat
ttccaaacccacgatcagatcggcatgattgggactgggccagcccacatggcggccatg
aacatgcctattcccttcaacttggtggtgccccccatgcctccgccaggctacctggcc
caggccaacggccctgctgcaggtcgtggtggggtgctgaagggcaaagcggggcgtggc
gggcgccagaggacccgcggcatggggaaccacggtagcagcgggcaggccaacgggcac
aacagccaggctagccaggacgtatcttcccagcccttctcccaggggccactcacccag
ggctacatcaccatgagtcagccctcccagatgagccagcctggcctctcccagcctgaa
ctttcccaggacagttatttaggtgacgagttcaagtcccagatcgacgtggctctgtcg
caggattcgacttaccagggtgaacgtgcataccaacatggtggagtgactggactgtca
cagtactag
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