Oncorhynchus gorbuscha (pink salmon): 124002891
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Entry
124002891 CDS
T07892
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124002891 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124002891 (smarcc2)
03036 Chromosome and associated proteins [BR:
ogo03036
]
124002891 (smarcc2)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124002891 (smarcc2)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124002891 (smarcc2)
PBAF complex
124002891 (smarcc2)
GBAF(ncBAF) complex
124002891 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
124002891
NCBI-ProteinID:
XP_046166662
LinkDB
All DBs
Position
LG18:complement(48085254..48098722)
Genome browser
AA seq
1081 aa
AA seq
DB search
MSTPASASAQIQMLNCFFFFTGPFSFLFHPISLHGLLGQYKRHEFSWSGSFYPQMYIQAE
PPTNKSLSSLVVQLLQFQEEVFGRHVSNPPLTRLPTKSFLDFKSGGALCHILAAAYKFKS
DQGWRRFDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKR
HQGSVTEDKTSSSHVVVPIPASLEEEEWVRLVMKRDKQVLLHWGYYPDSYDTWISASEVE
AAVEEAPSPEKPRKVHAKWILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPG
DERRDKKPGSAKKRKRSPSPSPTPPPQESKKKNTKKGCGPTTPYTKSKRGQREEEPEDLT
KDLDEPSPVPAVEEVTLPKTANTKKDSESTPVKGGTMTDLDEQEDESMETAGKEEEEGSP
SVKGEPVKGSDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRP
TPMGPPPTSHFHVLADTPSSLVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTD
MYSKKTGPPKSKTAASAMRDWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFL
RLPIEDPYLEDTSSSLGPLAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEF
SRMKEEVPAALVEAHVRRVEEAARTSGRQDPLYGLEGSGIAGTSLEEGEKPEESSEESKS
DSQSSEEKRETKENKEGAMEEGEKQGENGKKEEERGREGEGEGEQEAEKTDSEMGDGEKD
KEGKEGSEESQREGESEGERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIK
SLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMR
ARQQHFQQIQQHSQTGGPHSAPAPTGPPPPPQGPSATQSQPTLSTPAPQPAPSPAPPTTS
IPSSAQPAEPQPPSSGPHTSPPRPPGQPPTAHSSTTPTLHEPSAPLPEDTHHSSAPVPPP
Q
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtctactccggccagcgcaagtgcacaaatccagatgttaaactgttttttttttttt
accggccccttcagttttctctttcaccccatttcactccatggtcttttagggcaatat
aagcgccatgagttttcatggtccggctccttttacccccagatgtacatccaggcggag
ccccccaccaacaagtctctgtccagcctggtggtccagctgctgcagtttcaggaggag
gtgttcggacgacatgtcagcaacccacctctcaccaggttgccgacgaagagtttcctg
gactttaagtctggtggggctctctgccacattctggctgcagcctacaagttcaagagc
gatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaatgtggag
atgttcatgactatcgagaaatctctagtacagaacaactgtctgagtcgaccagtgatc
tacctgagctctgacattgaggccaagctactggggaaactgaaggacatcatcaagagg
caccagggctcagtgactgaagacaagacgtccagctcccatgtggtggttcccatccct
gccagtctggaggaggaggagtgggtgcgtctggtaatgaagagagacaagcaggtgctg
ctccactggggatactatcctgacagctatgacacctggatctcagccagtgaggtggag
gctgctgtggaagaagcgcccagcccagagaaacccaggaaggtccatgccaagtggatc
ctggaccttgaccagtttaatgagtggatgaatgaggaggactatgaggttggggagggg
ggccccaagaggaagagaatctcagccaagaccctgacggatgaggtcaccaccccaggg
gacgagcgtcgtgacaagaagcccggcagtgccaagaagaggaagcgctcgccctccccc
tcgcccaccccaccaccccaggagagcaagaagaagaacacaaagaaagggtgtgggccc
accaccccgtacactaagtctaagcgaggccagagagaggaggagccggaggatctgact
aaagatctggatgaaccatcacctgtacctgcagtggaggaggtcaccctacctaagaca
gccaacactaagaaagactctgagtcaacaccagtaaagggaggtaccatgacagacctg
gatgagcaagaggatgaatccatggaaactgcaggaaaggaggaggaggagggctctccg
agtgtgaagggagagccggtgaaagggtcggaccttcatgaggacaacgtgaccgagcag
acccaccacatcattatccccagctatgctgcctggttcgactacaacagtgtccatgct
attgagcgtagagccctcccagagtttttcaacggcaagaacaaatccaaaacccctgag
atttacctggcctataggaacttcatgatagacacttacaggctgaacccgcaggagtac
cttacctctaccgcctgtcgtaggaacctggccggagacgtgtgcgccatcatgagggtg
catgcgttcctggagcagtggggtctgatcaactaccaggtggactcagagagccggccc
acccccatgggccccccgcccacctcccacttccacgtcctggctgacacaccctccagc
ctggtgcccctgcagcccaaggcctcccagactccggcggcccagcagattctgtccttc
ccagacaaggtgaaggagaagcagccagccgacctgcagaactttggcctgaggacagac
atgtacagcaagaagactgggcctcctaagagtaagactgctgctagcgccatgcgagac
tggaccgaacaggagacactactgctgctagagggtctagagatgtacaaggatgactgg
aacaaggtgtcggagcacgtgggctcacgtacccaggacgagtgtatcctgcacttcctg
cgtctgcccatcgaggacccatacctggaggacacgtcctcgtccctgggccccctggcc
taccagcccgtccccttcagccaggcaggcaaccctgtcatgagcaccgtggccttcctg
gcctccgtggtggacccccgcgtggcctccgcagccgccaaatctgccctggaggagttt
tcccgtatgaaggaggaggtcccagcagcactggtggaggcgcatgtgaggagggtggaa
gaggcggcgcggaccagtggcagacaggaccccctctacggcctggaaggcagcggcatc
gcaggcaccagcctggaggagggagaaaaacctgaagagagcagtgaggagagtaaaagt
gacagccaatccagtgaagagaagagggagaccaaggagaacaaagagggagccatggaa
gagggggagaagcaaggagaaaacgggaagaaggaggaggagagaggaagagagggagaa
ggagagggagagcaagaggctgagaagaccgactcggagatgggtgatggagagaaggat
aaggaagggaaggagggctcggaggagagccagagagaaggagagagtgagggagagagg
aaggctaaggtggagcgggatgtgggagaggggaacctggctaccgcagctgcctctgcc
ctggctgctgctgccgtcaaagccaagcacctggctgctgtggaggagaggaagatcaag
tctctggtggctctgctggtggagactcagatgaagaagctggagatcaaacttagacac
tttgaagagctggagaccatcatggaccgagagagggaggcgttggagtaccagaggcag
cagctgctggcagaccgtcagtcgttccacatggagcagctgaaatatgcagagatgagg
gcgcgtcagcagcacttccaacagatccagcagcacagccagactggaggcccacactcc
gccccggcccccactggccccccacccccaccccagggcccctcagccacccagtcccag
ccaaccctcagtacccctgcaccacagccagctcccagcccagcaccccctaccacctcc
atcccttcctctgcccagcctgctgagccccagccgccctccagtggtcctcacacctca
cctccccgcccgccaggccagccccccacggcccactccagcaccaccccaacactccat
gagcctagtgcccctctacctgaggatacacaccactcctcagccccagttccccctcca
cagtga
DBGET
integrated database retrieval system
