Oncorhynchus gorbuscha (pink salmon): 124009810
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Entry
124009810 CDS
T07892
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03030
DNA replication
ogo03410
Base excision repair
ogo03420
Nucleotide excision repair
ogo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124009810 (lig1)
03410 Base excision repair
124009810 (lig1)
03420 Nucleotide excision repair
124009810 (lig1)
03430 Mismatch repair
124009810 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogo03032
]
124009810 (lig1)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124009810 (lig1)
Enzymes [BR:
ogo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124009810 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
124009810 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
124009810 (lig1)
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
124009810 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
124009810 (lig1)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
124009810 (lig1)
NER (nucleotide excision repair)
Other NER factors
124009810 (lig1)
MMR (mismatch excision repair)
Other MMR factors
124009810 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
124009810
NCBI-ProteinID:
XP_046177949
LinkDB
All DBs
Position
LG22:41279455..41316789
Genome browser
AA seq
1042 aa
AA seq
DB search
MQRSISSFFQPKTGKEKESKKSDGPGKDEPVKDKPEPIKRPLKVQNGVHEEPDSPVKKFT
KRSRQILDSDDEAPDGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD
VGGENSVDKPEVVQNNPEEKDTDEEKTKDERRRKLNVKVTATEEEKGKSEKAKERSPKER
SPKGQKERSPKGQKAKERSPKGQKAKERSPKGQKAKERSPKGQKAKERSPKGQKVKERSP
KERSPKGHKSVKDGKDMKEEKVSESPQAKKAPTISSFFAPRKAAVKMEKPEKCEREGEGK
SEGEGKSEGEGKSEGEGKSEGEGKKKTAQAQYDPSRPNYHPVDHACWSRGQRYPFHSVAR
TFEKIEEDSGRLRNIETLSNLLRSVIILSPEDLLCCVYLCLNQLGPAYMGLELGVGETVL
MKAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQRIMFQPANLIAGGVFNKLKDIGNM
SGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLSPPGQ
DFPPAVIDAGKGMSAEKQKAWIEEKSLLLKQTYCEMPNYDVIIPVILKEGIDELPNHCKL
TPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDN
TTKYPDIISRIHTVKNESVISCVLDTEAVAWDREKKQIQPFQVLITRKRKDVAAADIKVQ
VCVYAFDLLYLNGESLVKQPLSCRRALLKKSFQEKEGEFVFARAIDSDNTDAIAEFLEQS
VRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGT
YGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYTFLKEHILPKPRPYYRVDQSTEPDL
WLDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEEATSGGQIA
DLYRKQQVVQNQGDKADLEDYY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaaagtgacggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg
cctctcaaagttcagaatggggtccatgaagagcctgattcgcccgtgaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgaggctccagacggaatagaacaggag
ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg
tcccccgcctctccagtgacctcatccgcctcccccacccctggaacccctgacaccccc
acttccatctcaccctccggaatacccaaacgccgcaccgcgaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat
aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac
gtgggaggagagaacagcgtggataagcctgaggtggtgcagaacaacccggaggagaaa
gacacggatgaagagaagaccaaagatgagagaaggagaaagcttaatgtcaaagtgacc
gcgaccgaggaggaaaaaggaaaaagtgaaaaggctaaagagagaagtcctaaagagaga
agtcctaagggtcaaaaggagagaagtcctaagggtcaaaaggctaaagagagaagtcct
aagggtcaaaaggctaaagagagaagtcctaagggtcaaaaggctaaagagagaagtcct
aagggtcaaaaggctaaagagagaagtcctaagggtcaaaaggttaaagagagaagtcct
aaagagagaagtcctaagggtcacaagtctgtaaaggatggcaaagacatgaaagaagag
aaagtgtcagaaagcccccaagccaaaaaagcccccaccatcagcagtttctttgctccc
aggaaggctgctgtaaagatggagaaaccagagaagtgcgagcgagagggagagggaaag
agcgagggagagggaaagagcgagggagagggaaagagcgagggagagggaaagagcgag
ggagagggaaagaagaagactgcccaggcgcagtatgacccgtccagacccaactaccac
cctgtagaccacgcctgctggagccggggacagaggtaccctttccattctgttgcacgc
acctttgaaaagattgaggaagattctggcagattgaggaacattgaaacattatcaaat
ctcctacgctctgttatcatcctctctccagaggacctgctgtgctgcgtctacctgtgt
ctcaatcagctgggtcctgcttacatggggctggagctgggagtgggagaaactgttctg
atgaaggctgtcgcccaagctactgggcgacagttggacaaaatcaaggcggaggctgca
gagaagggggacttggggttggtggctgagagttcccgtaacaaccagagaattatgttc
cagccagccaatctgatcgcagggggtgtgttcaacaaactgaaagacatcgggaacatg
agtgggaattctgccatgaataagaagattgacatcatcaaaggtctctttgtagcctgt
cgtttctctgaagccagatacattgtcaggtcgctggcagggaagctgaggattggcttg
gctgaacagagtgtactgtctgccctgagtcaggccgtgtgtctgtctcctccaggacaa
gacttccctccggcggtgattgacgcagggaaaggaatgagtgcagaaaaacagaaagct
tggatagaagagaagagccttctcctcaaacagacttactgtgagatgcccaactatgat
gtcatcatcccagtcattctgaaggaggggattgatgaactccccaaccactgcaaactc
actccaggtgtaccgttgaggcccatgctggctcaccccaccaaaggtgtaggagaggtg
atgaagagatttgatgaagccgccttcacctgcgagtacaagtatgatggagaacgagca
cagatccatatcttggagaatggggaagtgcgtattttcagtcgcaaccaggaggataat
accaccaaatatcctgacatcatctctcgcattcatacggtaaagaatgagtctgtgata
tcctgtgtgttggacactgaggcggtagcttgggacagagagaagaaacagatccaaccg
ttccaggttctcatcacacggaagagaaaggacgtggctgcagctgatatcaaggttcaa
gtgtgtgtgtacgccttcgacctgctgtatctcaatggagagtctctagtgaagcagccc
ttgtcatgtcgcagggctctgttgaagaagagcttccaggagaaggagggagagtttgtg
ttcgcccgcgccatcgactcagacaacacagacgccatagctgagttcctggagcaatcg
gttcgagactcctgtgagggactcatggtgaagactctggagaaagatgccacgtatgaa
atcgccaagcgctctcacaactggctcaagctgaagaaggattatctggatggcgtgggg
gacacgatggatctgtgtgtgatcggagcctatctggggaagggcaagagagcagggacc
tacggaggctttctgctcgcctgctacgatgaggacaatgaagagttccagtccgtctgc
aagattgggacaggtttcaaggatgaagatttggagcaacattatacattcttaaaggag
catattttgccaaagccccgcccctattaccgtgtggaccaatcaactgagcccgacttg
tggctcgatgccgtgcaagtatgggaagtgaagtgtgccgacctatcgctgtcgccgatc
tacaaggctggcatgggattgtgtgacccagagaagggcatctctcttcggttcccacgc
ttcctgaggatcagagatgataagaagccggaggaggccacttcaggtggacagattgct
gatttatacaggaagcagcaggttgttcagaatcagggtgacaaagctgacctcgaggac
tactactga
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