Oncorhynchus gorbuscha (pink salmon): 124037551
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Entry
124037551 CDS
T07892
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124037551
Transcription factors [BR:
ogo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124037551
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
124037551
NCBI-ProteinID:
XP_046208315
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All DBs
Position
LG06:complement(12431844..12645675)
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AA seq
779 aa
AA seq
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MMSSKQATSPFAPATEEDEAMGQDDVGWANQDREIQDQPASPTLHSKPLPEEHQPIRDSQ
PESAWKSIGSTQTDNGSSKGCSLYSYRNNSTSPPKPEECSRERGEQLGGSTFGTLERRKG
SLADVVDTLKQKKLVELTKTEQDESTCMERLLSKDWKDRMERLNASKLLGEVKGTPESLE
EKERQLSTMIGQLISLREQLLAAHDEQKKMAASQMEKQRQQMELARQQQDQIARQQQQLM
QQQHKINVLQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAAQQGFLFPHNMSYKPGDNYP
MQFIPSTMAAAAASGLSPLQLQFPYFLSLQQLYAAQLASMQISPGAKMASLPQPPNSSDP
LSPPGLKSEKRVLSPVTHVKEEGLTQPLNLSARSKTCDRSPSSPSHTLFPSNKTSPITMG
KGRIPSPLSNMGRGSLGGCSEHTHMPAHTLTDILSSLNSTALFGDQDAVMKAIQEARKMR
EQIQREQLHHQQQQSLEAKLTALSGMSLSNGNKERMHFESLSQHLGNLGEDGKMGHRVID
LTRPEDLHGGASTTEARVFREARGRNSAEPHIKRPMNAFMVWAKDERRKILQTFPDMHNS
NISKILGSRWKSMSNQEKQPYYEEQARLSKNHLEKYPNYKYKPRPKRTCIIDGKKLRIGE
YKQMMRSRRQEMRQFFSVGPQPQIPISNSAGGLYPGAITMATATPSPHLTSDCSSASASP
EPAIPVIQSTFGVVKPEPVAMVTGDHPVNGEDEIDMYEDFEDKSDYSSDHETREPVSAN
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccaagcaagccacatctccgtttgccccagcgacggaggaagatgaagcg
atgggtcaggacgatgtgggctgggccaatcaggacagagaaatccaggaccaaccggcc
tcacccactctgcacagcaaacccctcccagaggagcaccagccaatcagagacagccag
cctgagtcggcgtggaagagtataggctctactcagacggacaatggtagcagcaagggc
tgttccttgtactcctaccggaataactctacctctccaccaaagcccgaggagtgttct
cgggagcggggcgagcagctaggcggatcgaccttcggaacacttgagcgccgcaaagga
agcctggccgacgtggtggacacactgaaacaaaagaaactggtggagctgacaaagaca
gagcaggacgagtcgacctgtatggagagacttctgtctaaagactggaaagacaggatg
gaaagactgaatgccagcaagctcctaggagaggtcaaaggtaccccagagagtttggag
gagaaggagcggcagctgtccaccatgatcggccagcttatcagcctgcgggagcagctc
ctggcggcccacgacgagcagaagaagatggctgcgtcacagatggagaaacagaggcag
caaatggagctggcccgccagcagcaggaccagattgcgaggcaacagcagcagctcatg
cagcagcagcacaagatcaacgttctacagcagcagatacaggtgcagggtcacatgcct
cctctgatgatcccagtgtttcctcatgaccagcgatctctggctgctgccgccgctgct
gcacagcagggcttcctcttcccacacaacatgtcctacaaaccaggtgataactacccc
atgcagttcattccatccacaatggcagctgcagccgcgtcaggactgagcccgctacaa
ctacagtttccctatttcctctcattgcagcagctgtacgccgcccagctggccagcatg
cagatctcacctggagccaaaatggcctcactgccacagcctcccaactcctcagacccc
ctatcgccccccggcttaaagagtgagaagagagtgttgagtcctgtcactcatgttaag
gaggaagggttgacgcagcccctgaacctctcagcccgatccaagacttgcgaccgctcc
ccgtcctcgccctcacacaccctgttccccagcaacaagaccagccccatcaccatgggg
aaggggcgcatccccagccctctctccaacatgggcagaggctcactgggtgggtgcagt
gaacacacacacatgcctgcgcacacactcacagacatcctatccagcctgaactccaca
gcgttgtttggggaccaggacgcggtgatgaaggccatccaggaggcgaggaagatgagg
gagcagatccagagagaacagcttcatcatcagcagcagcagagcctggaggccaagctc
acagccctgagcggcatgagcctcagcaatggcaacaaggagcggatgcactttgagagt
ttgagtcagcacctgggcaacctgggagaggatggaaagatgggccacagggtcattgac
ctcaccagacctgaggatcttcatggtggtgccagcactacggaagcacgggtcttcagg
gaggccaggggcaggaacagtgccgagccccacatcaagaggcccatgaatgccttcatg
gtgtgggccaaggacgagaggaggaagatcctgcagaccttccccgacatgcataactcc
aacatcagcaagatcctgggctctcgctggaagtccatgagcaaccaggagaagcagcca
tactatgaggaacaggctcgtctcagtaagaaccatctggagaagtaccccaactacaag
tacaagccccggcccaagaggacctgcatcatcgacgggaagaagctgcgcatcggggag
tacaagcagatgatgcgctcgcggcgacaggagatgaggcagttcttcagtgtggggcca
cagcctcagatccccatcagcaacagcgctggaggcctctacccgggtgccatcaccatg
gcgacagccacgccttcaccgcacctaacatcagactgctccagtgcgtcggccagcccc
gagcccgcaattcctgtcatccagagcacgttcggcgtggtcaagccagagccggttgcc
atggtgaccggtgaccacccagtcaacggggaggacgagatagacatgtacgaagacttt
gaggataaatcggactacagcagcgaccacgagacacgggagcctgtcagtgccaactga
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