Oncorhynchus gorbuscha (pink salmon): 124043815
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Entry
124043815 CDS
T07892
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124043815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124043815
Spliceosome [BR:
ogo03041
]
Complex A
U1 snRNP components
U1 related factors
124043815
Complex B
124043815
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
DUF4936
Motif
Other DBs
NCBI-GeneID:
124043815
NCBI-ProteinID:
XP_046218762
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Position
LG09:complement(57458283..57496407)
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AA seq
894 aa
AA seq
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MSSDDNNGQSQAPSFAGVPPSGMPPPFMGPPGMPPHYPPMGMPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPPMGQMPGMMPPMMPGMMMPPRMPAATMQPTGPPGVDTTVIAMPGTVGTT
NGSPRDDQPKNKSVWTEHKSLDEKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCQWKEYK
SDNGKAYYYNSHTKESRWTKPKELEDLEAMIKAEENGMAEVCAPGTVIITPNLQLDSAAS
MATMMMEMPAMRPAPTVSVEQMSLVPMLVAEVNADSPVNSTEDLAGMEASASNDASKEER
PELVKKTYKWNTKEEAKLAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQA
FNAYKVQTEKEEKEETRIKYKESKEMYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVP
ERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDN
PTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDE
LHDNGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYH
DEKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEARER
EREKEEARKMKRKEATFKSMLKQATPALEPEATWEEVRERFLKESAFEDVTLESERKRIF
KDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYHTKKKKRSQSKSP
SERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGGRERDSKREKDQEKEKE
NDKSRGKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatgataataatggccagagccaagcaccttcttttgctggggtcccaccc
tcagggatgccaccaccttttatgggaccaccaggaatgccgcctcattatccaccaatg
ggaatgccacccatgggacagaggcctcccaacatggctcccatgccacctggtatgatg
ccacctggcatgatgccaccaatgggagggccacccatgggacagatgccaggcatgatg
ccacctatgatgcccgggatgatgatgccacctcgcatgccagctgcgacgatgcagcca
acaggaccgcctggagtggacacaactgtcatcgctatgcctggaacagttggtaccaca
aatggctcgccacgggatgaccaaccaaagaataagtctgtgtggacagaacataagtcc
ctggatgagaagacctactactacaacacagagaccaagcagtcttcctgggaaaagcca
gacgacctgaaatctcctgcagaacaaatgctgtctaaatgccaatggaaggagtacaaa
tcagacaatgggaaggcgtactactacaactcccacactaaggagtcccggtggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagctgaggagaatgggatggcggag
gtatgtgctcctggcactgtcatcatcacccccaaccttcagctcgacagcgctgcttcg
atggcgaccatgatgatggaaatgccggccatgaggccagctccaaccgtctcagtggaa
cagatgtccctggtgcccatgcttgtagctgaggtcaacgctgactcgcctgtcaactcc
acagaggacttggccggcatggaggcctcagccagtaatgacgcctcaaaagaggagagg
ccagagctggtgaagaaaacgtacaagtggaacacgaaagaagaggccaagctggccttc
aaagagctcctgaaggagaagggcgtttcatccaatgcgtcttgggaacaagccatgaaa
atgatcatcaatgacccacgctacagtgctctgccgaagttaagtgagaaaaagcaggcc
ttcaatgcttacaaggtgcagacggagaaagaggagaaggaggagactaggatcaagtac
aaggaatccaaggaaatgtatcagcgatttttggaaaaccacgagaaaatgacatctaca
accagatataagaaagcagagcagatgtttgcggagctcgatgtgtggagcaccgtccca
gagagggacagactggagatctatgaagacgtcctgttctacctagctaagaaggagaag
gagcaagccaagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaac
atggccaacgtgacgtaccgcaccacctggtccgaggcccagcagtacctgctggacaac
cccaccttcgcagaggacgaggagctccagaacatggacaaagaggacgctctgatctgt
ttcgaggagcacatccgagctctggagaaggaggaggaggacgagaagcagaagacactg
ctgagggagaggaggagacagcgtaagaacagagagtccttccagaaattcctggacgag
ctccatgacaacggtcagctccactccatgtctgcgtggatggagatgtaccccaccgtc
agctcagacatccgcttcgccaacatgctgggccagccagtttatggtgtctattccgca
ggctccactcccctcgatctgttcaagttctacgtggaagacctgaaggctcgctaccac
gacgagaagcggatcattaaggatatcctgaaggacaaaaacttcttggtcgaggtaaac
actagctttgaagactttggcactgtgatcagctcagacaagagagccacaacgctggac
gcaggcaacatcaagctagccttcaacagcttgctggagaaggcggaggctcgggagagg
gagcgggagaaggaggaggccaggaagatgaagaggaaagaggctaccttcaagagcatg
ttgaagcaggctaccccagccctggaaccagaggccacctgggaagaagtccgagaaaga
ttcctcaaagaatctgcattcgaagacgtgactctggagtctgagaggaaaaggatattc
aaagacttcatgcatgtcttggagcacgagtgccagcatcatcactccaagaccaagaaa
cactcaaagaagtccaagaagcaccacaggaagcgctcccgctctcgatcgggctcagag
tctgaaggtgaagacgattatcacaccaagaagaagaagcgctcacagtccaagtccccg
tccgagcgctcctccagtggggaatctgatagaagttataagaagtccaagaagcacaag
aagaaggggaagaagaggcgtcacaagtcgcaatctcctgaatccgaaggcgagcggaaa
gagaagggaggaagagagagggacagcaagcgggagaaggaccaggagaaagagaaagag
aacgacaagtcccgggggaagagtcgctccgaatccaagcagaagtcacctaaaaggaaa
tctaccaaggaggagggtggctgggacacttcaggcagcgagctgagtgaaggagagctg
gagaagaggaggaggactctactggaacagctggatgctccttga
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