Opisthocomus hoazin (hoatzin): 104327355
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Entry
104327355 CDS
T08436
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03013
Nucleocytoplasmic transport
oha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104327355 (UPF1)
03015 mRNA surveillance pathway
104327355 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104327355 (UPF1)
Enzymes [BR:
oha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104327355 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104327355 (UPF1)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104327355 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104327355 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104327355
NCBI-ProteinID:
XP_009930560
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
MFDSVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPA
CVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVF
LLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQL
RARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKL
EADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAP
LWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAV
DETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG
PPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAI
DSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADV
ICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMC
KKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVK
KGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGI
ITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGF
LNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQ
FSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAG
PSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGVPKGKTGRGGRQKNRFGIPGTSQ
SNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQID
VALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattcagttaatggacctgatggcattctgcagaatggagctgtggatgataac
gtggctaaaaccagccagcttctggcagaattgaattttgaagaagatgaagaggatacc
tattacacaaaggatcttcctgtgcacgcttgcagttactgtggtatccatgaccctgct
tgtgtagtttactgtaacaccagcaaaaagtggttctgtaacgggcgtggaaatacatct
ggcagccacatcgttaatcatcttgtgagagcgaagtgcaaagaggtgactctccataaa
gatggacctctaggagagactgtcttggaatgttacaactgtggatgtcgtaatgtgttt
ctccttggctttattccagctaaggcagactctgtggtggttttgctgtgcaggcagcca
tgtgccagtcagagcagtttaaaggatattaattgggacagttcacagtggcagcctctt
atccaagatcgctgtttcctttcatggctggtaaagattccatctgaacaggagcagttg
agagcacgtcagatcacagctcagcagattaacaaactggaagaactttggaaggaaaat
ccatctgcaacccttgaggacttagaaaagcctggtgttgatgaagaaccacagcatgtc
ctgcttagatatgaagatgcttatcaataccaaaatatatttggtcctctagtcaagctc
gaggcagactacgacaagaaactcaaggagtctcagacccaagataacatcacggtcaga
tgggacctgggcttgaacaagaaaagaattgcttattttactttgccaaagaccgattca
gatatgcgtcttatgcaaggagatgagatctgcttgaggtataaaggagacctggcccct
ttatggaaaggaattggtcatgttatcaaagttcctgataattatggtgatgagatagcc
attgagctgaggagcagcgttggagcgcctgtggaagttactcataacttccaagtggat
tttgtgtggaagtctacttcatttgacagaatgcagagtgctttaaaaacattcgctgtg
gatgagacttcagtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagat
gtaattattaaatgccagttgccaaagcgctttacagcacaaggacttcctgatctcaac
cattctcaggtttatgctgtgaagactgtactgcagcgtcctctgagccttattcagggt
ccccctggcactggaaaaacagtgacatcagccacaatcgtctatcatctggctagacag
ggcaatgggcccgtgttggtctgtgctccgagtaatatagctgtagatcagttgactgag
aagatccaccaaactggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaatt
gactctcctgtatccttcttggcattgcataaccagatcagaaacatggatagcatgcca
gagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcatctgctgatgag
aaacgttaccgtgcactgaaacgaacagcagagcgtgagttactgatgaatgcagatgtg
atctgctgcacctgtgtgggagctggtgatccaagacttgcaaaaatgcagttccgctcc
attctgattgatgagagcacacaggctactgagccagagtgcatggtgccggttgttctg
ggagcgaaacagcttattcttgtgggtgaccactgtcagcttggtcctgttgtgatgtgt
aaaaaagctgcgaaggctggcctgtctcagtctctcttcgagaggctcgtggtgctgggg
attcgtccgattcgcctccaagtgcagtatcgcatgcatcccgcactcagtgcttttcca
tccaatatcttctatgagggttcgctccagaatggtgttactgcagcggaccgtgtgaag
aagggttttgatttccagtggccacagccagataagccaatgtttttctatgtaacacaa
ggacaggaagaaattgccagctcaggcacctcttacttaaacaggacggaagctgccaat
gtggagaagataactacaaagctattgaaagctggtgccaaaccagatcagattggcatt
atcactccttatgaaggtcaacgatcctatctggtgcagtacatgcagttcagtggttcc
ttgcacacaaagctctaccaggaagtggaaattgcaagtgtggatgccttccaggggcga
gagaaggacttcattatcctttcttgtgtgagggccaatgaacaccaaggaatagggttc
ctgaatgaccccaggcgtcttaatgtagctcttacaagagcaaggtatggagtaattatt
gttgggaacccaaaagcgctgtctaaacaaccactttggaatcacctgctgaattactac
aaggagcagaaggttctggtggagggaccactgaacaacctccgggaaagcctcatgcag
ttcagcaagccccggaaacttgtcaacaccatcaaccctggtgcccgtttcatgactact
gccatgtacgatgcgcgtgaggccattattccaggatctgtctatgaccggagcagtcaa
gggcgcccatccaacatgtacttccaaacccatgaccagatcgggatgatcagtgctggc
cccagccatgtcactgctatgaacattcctatccctttcaacctcgtgatgccaccgatg
ccaccaccgggatactttggccaggctaacggaccagcggcaggacgtggggtgccaaaa
ggaaagactggtcgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcag
tcaaaccttccaaacagccaagcgagccaagatgtggtgtcccagcctttctcccagggt
ccactgactcaggggtatatctccatgagtcagccatcacagatgagtcagcctgggctc
tcccaaccagaattatcacaggacagttaccttggtgatgagtttaaatctcagattgac
gtggcgctgtcacaggactctacgtaccagggtgaacgtgcatatcaacatggcggagtg
acgggactgtcacagtattag
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integrated database retrieval system
