Opisthocomus hoazin (hoatzin): 104328447
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Entry
104328447 CDS
T08436
Symbol
LIG4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104328447 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oha03400
]
104328447 (LIG4)
Enzymes [BR:
oha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104328447 (LIG4)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104328447 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
DUF2948
Motif
Other DBs
NCBI-GeneID:
104328447
NCBI-ProteinID:
XP_009931773
LinkDB
All DBs
Position
Unknown
AA seq
891 aa
AA seq
DB search
MASTPTSQPALKKTVASHVPFADLCSTLERIQFHAALHQKEKDVADSFYPAMRLILPQLE
RERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTPAGSRGDAGDFAMIAYFVLKPR
SPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLITQSTALEQKWLIRMIIKDLKL
GVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLSDVSIMLFSAFKPMLAAIADV
QQIEKQMNNQTFYIETKLDGERMQMHKDGDVYKYFSRNGFDYTQQFGASPLDGSLTPFIH
NVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMVEDSDLQTCFCVFDVLMVNDQK
LGHEVLSRRYEILSSVFTPVMGRIHVVHKRSARTRKEVIDALNEAIDNREEGIMVKDPAS
TYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMMSHFLCAVAETPPPNEK
PAVFHSICRVGSGYTMKELYDLGLKLAKYWKPYHRKDPPRNILCGTEKPEMYIEPCNSVI
VQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTSDMLEDLRSKAEGKLASKHLH
IDEYEEPQEKKRKTVSKVKRMIGIAEQFKAPDLSNVSKVSNVFEDVEFCVMTGTGKCSKS
ELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIASNKYDVVRAEWLLQCFETKALV
PWQPAIMIHMSPDTKEHFAREYDCYGDSYAADTDVAQLKEVFSRMKDNRGMPLDMIAELE
ERYSWNSCQLSIFRGNAIYVDCYAVVNEPRTTIRGTTLSVRALELRFYGAKVVSHLEEGV
SHVVVGEDHSRVKEMKGLRRTFGKKFKIVSELWVTESVEEGVPKNENQYLI
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacacccacttcgcagcctgctcttaaaaaaacagtggcctcccacgtgcct
tttgcagacctgtgctccaccctggagcgaatacagttccatgccgctcttcatcaaaag
gagaaagatgttgcagattctttttatccagccatgcggcttattcttccacagctggaa
agagaaaggatggcgtacgggattaaggaaacgatgcttgccaagctgtatattgaactg
cttaatttaccgaaagatggaaaagatgctgccaagcttttaaattacagaacgcctgcc
ggctcacgtggagacgctggggattttgcaatgatcgcgtacttcgtgttgaaacctcgg
agcccgaagcaaggacggctgacgatagagcaagtcaatgaacacttagacgcgatagct
aataataatgctgctaaaaacaagggcctgttaaagaaaagtcttcttcagttaattacc
cagagcacagcactggaacaaaaatggctcatccggatgattataaaggatctgaagctt
ggcgttagtcaacaaactatattttccatttttcatcctgatgctgccgagttgcacaac
gtcacaactgatttggaaaaagtctgcaggcagctgcacgatccctccgtctcgcttagt
gatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgccgatgtc
cagcaaattgagaaacaaatgaataaccagacattttacatagaaactaagctggatggt
gaacgcatgcagatgcacaaagatggagatgtatataaatatttttcccgcaatgggttt
gactatacccagcagttcggcgcttccccccttgatggttcgttaacaccatttattcat
aacgtgtttaagagcaatatacagaattgcattcttgatggtgaaatgatggcttacaat
cctgagacgcaaacctttatgcaaaaaggaaacaggtttgacataaaaaggatggtggag
gactctgacctgcagacatgcttctgcgtgtttgatgtattgatggttaacgaccagaag
ttgggtcacgaagtgttaagcagaagatatgaaatcttaagtagcgtgtttaccccggta
atgggcaggatacatgttgtgcataaaagaagtgccaggacgagaaaagaggtaattgat
gctttaaatgaagccatagataacagagaggaagggattatggtgaaagatcccgcgtcc
acctacaagcctgacaaacgtggggaaggctggttgaaaatcaagccggaatacgtcaat
gggctgatggacgaactggaccttttaattgtcggtggttactgggggaagggctcgcgt
ggtggaatgatgtctcattttctgtgcgctgttgcagagacgccccctccaaatgaaaaa
cctgctgttttccactccatttgtcgcgttggctctggctacactatgaaggaattgtat
gacctgggtttgaaactggctaaatactggaagccctaccacaggaaggaccctccccgt
aacattttgtgcggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtcata
gtccagatcaaggcagccgagattgttaacagcgacatgtacaaaactgactgtactttg
agattcccccgaattgagaagataagggaggacaaggagtggtacgagtgcatgacttca
gacatgttagaggatctcagaagcaaagcggaagggaagctggcatctaagcacctgcat
atagatgagtatgaagagccacaagagaaaaaaaggaaaactgtatcaaaggtgaagagg
atgattggaatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtttca
aacgtatttgaagatgttgagttttgtgttatgacgggaacgggaaagtgctcgaagtct
gaactggaaagcagaatagctgaatgtggtggcagcgtggtacagaaccccgggccagag
acttactgtgtcattgtaggagccgagaatgtcagagtgaaaaacatcattgcttccaac
aaatacgatgtggtgagggcggagtggctccttcagtgttttgaaaccaaagcgctggtg
ccttggcagccggccataatgattcacatgtctcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagctacgcagcagacacagatgttgcacagctcaaggaa
gtgttctcaagaatgaaggacaatagggggatgcctttggatatgattgcagagttggaa
gaacgttattcatggaacagttgtcagctcagtatattcagaggaaatgctatttatgtg
gactgttacgctgttgttaatgagcccagaactacaatccgtggaacgacactgtcagtt
agagctttggagctccgtttttatggtgcaaaagtagtctctcacctggaggagggcgta
tcccatgttgttgtaggagaagaccattcccgggtaaaagagatgaaagggctcaggaga
acatttgggaaaaaatttaaaattgtatctgagctgtgggtaacagagtcagtggaggaa
ggagtcccaaagaatgaaaatcagtacttaatttaa
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