Opisthocomus hoazin (hoatzin): 104329388
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Entry
104329388 CDS
T08436
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104329388 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oha03400
]
104329388 (LIG3)
Enzymes [BR:
oha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104329388 (LIG3)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104329388 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
aRib
Motif
Other DBs
NCBI-GeneID:
104329388
NCBI-ProteinID:
XP_009932806
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MPTGGRTLSQAAQAFGRGARLFSPRTQVSLPRPYCWSLGLPIASPSHWYRLLLRLVSLRS
AGRNWGGGFGDFHFSLLVNAWLRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGM
VRIGKIVPNPFTESGGDMKEWYHVKCIFEKLEKARATTKKIEDITDLEGWEELQDGEKEL
INKHISEANSKAGSTPKKKVIVQAKLTATGQLTTKDPLALITPSPKKFSGFTAKPKNSED
VSANSSHKSSLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDG
FHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFF
EKSKSCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQLEAEKEPGLKRTLSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKV
AHFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDISLMDRPLCERRKFLHDNMVEIPNRILFSEMKQVTKASDLADMITRVIREGLEGLV
LKDAKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
KSEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPKWLKINKIYYPDFIVPDPTK
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQISKEKADF
NVVAGEEDESTAGSSGENEGNSRSSTPHSAIKTPPSKSPAKAKKPEESKAVIGSPQKSEE
KRGEKRKASEMDDNGKKVLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASA
THVIGDIDENPGATRVSPNWIWECIRKRRLVAPC
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcaggacactatcacaggctgcccaggcgttcggcaggggcgcaaga
cttttctccccccgaacacaggtctccttgcccaggccctactgttggtcccttggcctc
cccatcgccagccccagtcactggtaccggctactgttacgccttgtgtctctccggtct
gcaggcagaaactggggtggtggctttggggatttccatttctccctgcttgtgaacgct
tggcttcgccaggcctgcacagctgcagaggacatggcggagcagaggtactgcgtggac
tacgctaagcgaggcacagcaggctgcaagaagtgcaaggagaagatcgtgaaaggaatg
gtgcgcattggaaagattgttcctaatcctttcacggagtctggcggggacatgaaggag
tggtaccatgtgaagtgcatctttgagaagctagagaaggcccgggccaccaccaagaaa
atcgaagacatcacagacttggaaggatgggaagagctacaagatggggagaaagaatta
atcaacaagcacatctcagaagcaaattccaaggctggaagtacaccgaagaaaaaagtg
atagtccaagctaagcttactgccacaggacagttaacaacaaaagatccactggctctc
atcactccatcaccaaagaagttctctggcttcacagccaagccaaagaattcagaagat
gtctctgcaaactcttcccacaagtctagcctatctgcaaaaaaatgtgatccgaagcac
aaagactgcttgctgcgagagttcaggaagctctgtgccatggttgcggaaaagcctagc
tataacgtgaaaacacagatcatccaggattttctgaagaagggatctggaggagatggt
tttcatggtgatgtatacctgaccattaagctgctgttaccaggcgtcattaaaattgtt
tacaacttgaatgataagcagattgtaaagctgtttagtaggatttttaactgcagccaa
gaagaaatggtccgggacctggaacagggagatgtttctgagaccatacgcctcttcttt
gaaaagagcaagtcttgtcctccagcagccaagagtctcctgaccatccaagaggtagat
gaattcctaatccagctgtcaaagcttactaaggaggatgaccagcaaagtgtgctgcaa
cagatctctcgcagatgtacgggcaacgatctgaaatgcatcatcaggctaattaagcat
gacttgaaaatgaatgctggagcgaagcatgtgttggatgctttggacccgaatgcttat
gaggcattcaaagcatcacgcaacctccaggacgtggtagagcgagtcctgaagaaccag
ctggaggctgagaaggagccaggtctgaagcgaaccctcagtgtgcaggcctccctgatg
accccagttcagcccatgctggctgaagcctgcaagtcaattgagtatgccatgaagaag
tgcccaaatggcatgtatgcggagatcaaatacgatggcgagcgggtgcaggtccataaa
aatggagatcatttcagctacttcagcagaagcctcaaacctgtcctcccacataaagtg
gcccattttaaggacttcatccctcaggctttccctggtgggcaaagtatgatcctagat
tcagaagttcttctgattgacaacaaaactggcaagccacttccatttgggactcttggt
gtgcacaagaaagctgctttccaagacgccaacgtttgcttgtttgtgtttgactgcatc
tatttcaatgacatcagcctgatggacaggcctctgtgtgaacgtcgtaagtttctccac
gataacatggttgaaatccccaaccggatcctcttctcggagatgaagcaagtcacaaaa
gcttcagatctggcagatatgatcacccgagtcatccgtgagggactggaaggactggtg
ttgaaagatgcaaagggtaattatgaaccaggaaaacgacactggctgaaagtgaaaaag
gactacctaaacgagggtgcaatggctgacacagcagacctggtggtgctgggagctttc
tatggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgctatgatccc
aagagtgagaagtggtgcactgtgaccaagtgttctggtggccatgatgacgccaccttg
gcgcgtctgcaaacagagctggacatggtgaagatcagcaaggatcctagtaaaattcca
aagtggctaaaaatcaacaaaatctactacccagacttcattgtcccagatccaacgaaa
gccccagtgtgggagatcacaggggctgaattctctaaagctgaagcccacactgcagat
gggatctccattcgcttccctcgctgcacccgcattcgagacgacaaagactggaagaca
gccaccaacctccagcagcttaaggagctgtaccaaatctccaaagagaaggctgatttc
aatgttgttgctggggaggaggatgagtccacggctggcagcagtggagagaatgaggga
aattccaggtcttccacaccacacagcgctattaaaactcccccaagcaagtcacctgct
aaagccaagaagccagaagaaagcaaagcagttattggatcccctcaaaaatcagaggag
aaacgaggcgagaagagaaaagcatctgagatggatgacaatggaaaaaaggtgctgctg
gacatattcactggtgtgaagctgtacctgtcgccctctgtgaaggactttgacaaaatc
cggcggtatttcatagcatacgatggggatcttgtgccagagtttgacacagcctcagca
acgcatgtgataggggacattgatgagaatcctggtgctacgcgtgtgtctcccaactgg
atctgggaatgcatccggaaacggagactggtggccccatgctag
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integrated database retrieval system
