Owenweeksia hongkongensis: Oweho_1705
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Entry
Oweho_1705 CDS
T01677
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oho
Owenweeksia hongkongensis
Pathway
oho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Oweho_1705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oho03400
]
Oweho_1705
Enzymes [BR:
oho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Oweho_1705
DNA repair and recombination proteins [BR:
oho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Oweho_1705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEV32693
UniProt:
G8R0I9
LinkDB
All DBs
Position
1853763..1857128
Genome browser
AA seq
1121 aa
AA seq
DB search
MALHFIPMADTATDFINNYLLDDRFRGIAEELRNNKFHKLQLKGLTASFTSLAASASFLH
SERPHLFILNDKEEAAYFLNDLERITDEKDVLFYPGSYRRPYQVEETDNANVLLRAEVLN
RINSRKKPAMIVSYPDALFEKVITRKQLNANTFSLKEGDELSIDFLNETLFEYHFERVDF
VVEPGQFSVRGGIVDVFSFSHDQPYRIEFFGDEVESIRTFDIESQLSIDKVKKLSLIPNV
ENKMMLETRESFFDYISDKMVVWVKSVPLSAKRLDDFFTKAEEVYGELNDTLKHAKPEEL
FINGEAFKKTLEGFATVEWGNDTFYSPNKVFEFDTKPQPSFNKKFELLVEDFKTNTENGW
KNYILCMTAQQVERFYAIFEDIGHEVDFQPIVHTLHEGFIDPQGKKVIYTDHQIFERYQK
FKLKTGYEKKQAITLKELTSLQVGDYVTHIDHGIGEFGGLQKIDVNGKHQEAIKLIYNGG
DVLYISIHSLHKIARYNGKEGTTPSTHKLGSGAWAKTKAKAKKRVKEVAFDLIKLYAQRK
ANKGFQFSPDTYLQHELEASFIYEDTPDQVTATADVKADMEAPMPMDRLVCGDVGFGKTE
VAVRAAFKAVADSKQVAVLVPTTILAFQHFKTFSERLKDLPCNVDYINRFKTKKQQTETL
KKLEDGTLDILIGTHRLVGKDVKFKDLGLLIIDEEQKFGVAVKDKLKNLKVNVDTLTLTA
TPIPRTLQFSLMQARDLSVMNTPPPNRHPIETQVVPFSEEMVRDSIMYEMSRGGQVFFIH
NRVENIREVAGMISRMVPDAKIGIGHGQMEGKKLEELMLNFINGHFDVLIATSIIENGLD
VPNANTIIINNAHHVGLSDLHQMRGRVGRSNKKAFCKLIAPPMSTLTEEARKRLTAIEQF
SDLGSGFQIAMRDLEIRGSGDLLGGDQSGFITDIGFDTYQKILAEAIDELKETEFKDLYN
DDQKKKDFVKETLLDTDLEILIPDTYVNKVDERLRLYQALDSLESPAQLDEFEKELIDRF
GPAPDEVYELLNSVRLRWLGKDIGFDKLVLKQERLIGYFIPDQNSPYFQSEKFNLVLQFL
RDQPKAQMKERNNKLYLSFGDVKTVDQALRLLEPILVKNRG
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
gtggctttgcattttatacccatggcagacacagcaacggactttatcaataattacctt
ttggatgaccgctttcgcggaatagctgaagagcttcgaaacaataagtttcataaactt
caacttaagggcctcaccgcatcatttacttcgttggcggccagtgccagctttttacat
tcagagcgtccacatctattcattttaaatgataaagaggaggccgcctattttttgaac
gacctagaacgaattactgatgaaaaagatgtactgttttaccctgggtcttatcgcaga
ccttaccaggtagaagaaaccgacaatgcaaatgtgctgcttcgtgcagaggttttgaac
cgcattaatagccgcaaaaagccggctatgattgtgagctatccggatgcgctttttgaa
aaagtaattacccgaaagcagcttaacgcaaatacattttcgctaaaagaaggtgatgag
ctaagcattgattttttgaatgaaacactttttgaataccattttgagcgtgttgacttt
gtggtagaacctggtcagttttcagttcgtggaggtattgtagacgtattttccttttcg
cacgaccagccttatcgcattgagttttttggagatgaggtagaaagcattcgcaccttt
gacatagaaagccaactgagtatagacaaggtaaaaaagctcagtcttattcccaatgtg
gagaataagatgatgctcgaaacccgtgaaagtttcttcgattacatttctgacaaaatg
gtggtttgggtaaaaagtgtaccgctttccgctaaacgtttggacgactttttcaccaaa
gctgaagaagtttatggggaactgaacgacactttaaaacacgccaagccggaggaatta
ttcattaatggcgaagcattcaagaaaaccttagagggctttgctactgtggaatggggg
aatgacactttttattctccaaacaaggtttttgaatttgacaccaagccgcaaccttca
ttcaacaaaaagtttgaactacttgtagaagactttaaaaccaatacagaaaacggttgg
aagaattatattctctgcatgaccgctcagcaagtggaacgcttttacgccatattcgag
gacattggccatgaggtggattttcaacccatcgttcacaccctccacgaaggctttatt
gacccacagggcaaaaaggtgatttataccgaccaccaaatttttgagcgttatcaaaaa
tttaagctaaaaactggttatgaaaaaaagcaggccatcacgctaaaagagcttaccagc
ttacaagttggagattatgtaacacacattgaccacggcattggtgagtttggtggattg
cagaagattgatgtgaatggtaagcatcaggaggcaataaaactgatttacaacggtgga
gatgtgctttacatcagcattcactctttgcacaaaattgcacgttataacggcaaagaa
ggaaccactccttccactcataagttgggttcgggggcttgggcaaaaacaaaagctaag
gctaaaaagagagtaaaagaagtagcctttgacctcatcaagctttacgctcagcgtaag
gccaataagggttttcaattttcaccagacacctatttacagcatgagctagaggcttca
tttatatatgaagataccccggaccaagtgacggccactgctgatgtaaaagccgacatg
gaagctccaatgccgatggaccgtcttgtttgtggggacgttggttttggaaaaacagaa
gtggccgttcgtgcagctttcaaggctgtggctgatagtaagcaggtagctgttttggta
cccaccacaatcttggcatttcagcattttaaaacgttttctgaaagattaaaagatttg
ccgtgtaacgttgattatatcaatcgttttaaaaccaaaaagcagcaaaccgaaacccta
aaaaaactggaagatggaacgctggatattttgattggaacccaccgcttggttggtaaa
gacgtgaaatttaaggacctcggcctactgattattgatgaggagcaaaagtttggtgta
gctgtaaaggacaagcttaaaaacctgaaagtaaacgtggacaccctcactttaacggca
acgcctattccgcgtactttacagtttagcttaatgcaagcgcgtgaccttagcgtaatg
aatacgcctccaccaaaccgtcacccgatagaaactcaagtggtgccttttagtgaagaa
atggttcgcgacagcattatgtacgaaatgagccggggcggtcaggttttctttattcat
aaccgagttgaaaatattagggaagttgccgggatgataagccgcatggtacccgatgct
aaaattggtattggccatgggcaaatggaaggcaaaaaactggaggagctcatgctcaat
tttatcaatggtcattttgatgtattaattgctacttccatcatcgaaaatggtttggat
gtacctaatgcaaacaccatcattataaataacgctcatcatgtagggctaagtgatttg
caccaaatgcgtggtcgtgtagggcgaagcaataaaaaagctttctgtaaacttattgcg
ccacctatgagcactttaacggaagaagctcgaaaacgtcttaccgccattgagcagttt
agcgacttaggcagcggcttccaaatagccatgcgtgacctggaaatacgtggtagtggt
gacctattgggtggagaccaaagtggttttattaccgacattgggtttgatacttatcag
aaaattttggctgaagccatagatgaattgaaagaaacagagttcaaggatctttataac
gatgatcagaaaaaaaaggatttcgtgaaagaaactttgctggatacggatctggagatt
ttgattcctgatacttatgtaaataaggtggacgagcgtttacgtttgtaccaagccctg
gattctctggaaagccctgcacagttggatgaatttgaaaaagaactaatcgaccgattt
ggcccagctcccgatgaagtttatgaacttctaaactctgtaagactgaggtggctgggt
aaggatattggttttgataagttagtcttaaaacaagaaaggttgatcggatactttatt
ccagaccaaaactccccgtacttccaaagtgagaaattcaatcttgtacttcagttttta
agagatcagcccaaagcgcaaatgaaagagcgaaataacaaactgtacctcagctttggc
gatgtaaaaaccgtagatcaagcactacgattactggaaccaatattggtaaaaaatagg
gggtga
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