Brucella intermedia: IAR37_07195
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Entry
IAR37_07195 CDS
T06833
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
oin
Brucella intermedia
Pathway
oin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IAR37_07195 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oin03400
]
IAR37_07195 (ligD)
Enzymes [BR:
oin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IAR37_07195 (ligD)
DNA repair and recombination proteins [BR:
oin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IAR37_07195 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QNQ39175
LinkDB
All DBs
Position
1:1472608..1475124
Genome browser
AA seq
838 aa
AA seq
DB search
MGQPLETYRKKRDFTLTSEPRGKSARAKGDLFVVQKHDARRLHYDFRLEMDGVLKSWAVT
RGPSLVPGEKRLAVHVEDHPLEYAGFEGTIPKGEYGGGTVIVWDTGRWKSTGDAHKQYKK
GHLEFELTGEKLKGRWHLVRMHGKPGEKRENWLLIKGEDDFAREPDEPDILEEKPESVKT
GRVIADVEDEEPGWSSKTGRIKKKKPAPAKKPAASRPTNSQKRAMPDFIEPELATLVPAA
PEGDRWLHEIKFDGYRIQAHVAQGEVKLYSRSGLDWTEKFGQQIVADLVGTGVDEAIFDG
EIVVENQSGLSDFSALQEDLSEGRSDRFTYYLFDLLHVDGNDLRQTPLVERKKLLEKLLS
KASSTLRFSEAFDADGAAVWENACGLGLEGIVSKLKNAAYKSGRSNDWRKSKCIGRQEFV
IAGYVPSTATRGAIGSLLLGVQDKKGLVPVGRVGTGFSVKVAKELYKRLYAMRLDESPFA
VPLTADERRGAKFVKPQLVAEIEFRAWTADKRLRHASFRGLREDKAASDVRWEEQNVPAR
VSDKDTQKIDVKLTHPDRVYWPGEGVTKQGLADYYAEVWPRIEPFIVNRPLALLRCPTGI
EGEFFFQKHAWKGLNEHIVEVQDPKDKDEEPYISIRDFNGLIGLVQAGTLEIHPWGSTLK
NWELPDTLTMDLDPGEGVSWPRVIEAATETRERLEKLGLTTFVKTSGGKGLHVVVPLKPK
ADWDTLKSFTKAIADQMAADSPDRYVSTISKAKRKGKILIDYLRNQRGMTAVAPYSPRAR
PGAGVSMPLAWEEVTPAIGPAHFTILNTPTRLAALKSDPWQDFRSAETPLPKMKKQGG
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgggacagccactcgaaacctaccgcaagaaacgcgatttcaccctgaccagcgagccg
aggggcaagtctgcacgggcgaaaggtgatcttttcgtcgtgcagaaacatgatgcgcgc
aggctgcattatgactttcgcctcgaaatggacggcgtcctgaaaagctgggccgtgacg
cggggcccaagcctcgttcccggcgaaaagcgccttgcggtgcatgtcgaggatcatcct
ctcgaatatgcgggcttcgaaggcacgatacccaagggcgaatatggcggcggcacggta
atcgtctgggatacggggcgttggaaatccaccggcgatgcacataagcaatacaagaaa
gggcatctggagtttgaactcaccggagaaaaactcaaagggcgatggcatctggtccgt
atgcacggaaagccgggcgagaagcgggagaattggcttctcatcaagggagaggatgat
ttcgcccgcgaacccgatgaacctgacattctcgaggaaaagcctgaatcggtgaagacc
ggtcgcgtgatcgccgatgttgaggacgaagagccggggtggtcatcgaaaaccggtcgc
atcaagaagaagaagccagcccccgcaaagaaacctgcagcctcacgtcccacgaacagc
cagaagcgagcgatgccggattttatcgagccggaactcgctacgctcgtaccggctgca
cctgaaggagaccgctggctccacgagataaagttcgatggctatcgtatccaggcccat
gttgcgcagggcgaggtcaagctttattcgcgcagcgggctggattggaccgaaaaattc
ggtcagcagatcgtcgccgatcttgtaggaacaggcgtggacgaagccattttcgatggc
gagatagttgtcgaaaatcagtcgggactgtccgatttttctgccctgcaggaagatttg
agcgaggggcggtcagatcgtttcacctactatctctttgatcttcttcatgtggacggc
aatgaccttcgccagacaccgctggttgagcgcaaaaagctgctcgaaaaactgctttcc
aaagcgtcgtccactctgcgtttcagcgaggctttcgatgccgatggtgcggcggtatgg
gagaatgcgtgcggacttggtctcgaggggattgtgtcgaagctcaagaatgcagcctac
aaaagcggacgcagcaacgactggcgcaagtccaaatgcattggacggcaggaatttgta
attgcgggctatgttccttcaacggcaacaagaggggcgattggctcgctgctcctgggc
gtacaggataaaaaggggctggttccggtagggcgggttggaacgggcttttcggtcaag
gtcgccaaggaactctacaaacgactgtacgccatgcggttggacgaaagccctttcgca
gtgccgttgacagcagatgaaaggcgcggcgcgaagttcgtcaagccgcagctggtggcc
gagatcgagtttcgcgcctggaccgccgacaagcgattgcgccacgcttccttcaggggg
ctgcgtgaggataaggccgccagcgatgtcagatgggaggagcaaaacgtgccagctcgt
gtttccgacaaggatacccagaagatcgatgtgaagcttactcatcccgaccgggtctac
tggccgggcgaaggtgtcaccaagcaggggctcgccgattattatgccgaggtctggcct
cgcatcgaacctttcatcgtcaatcgccctttggcgttgctgcgctgcccgaccggtatc
gagggagaattcttctttcagaaacatgcatggaaagggctgaacgagcatattgtcgaa
gttcaggacccgaaggacaaggacgaggaaccctatatcagcatccgggacttcaatggg
ctgatcggtctggtacaagccgggacactggaaattcacccttggggatcaacgctcaag
aactgggagctgcccgatacgctgacgatggatctcgatccgggcgaaggggtatcctgg
ccgcgcgtgattgaagctgctaccgagaccagggaacgtctggaaaaactgggattgacg
acctttgtcaaaacgtccggcgggaagggcctgcatgtggtggtgccgctgaagccgaaa
gctgactgggacacgctgaaaagctttaccaaggctatcgccgaccagatggctgcggac
agcccggatcgttatgtatccacgatttccaaggccaagcgcaaaggcaagattcttatc
gattatctgcgcaatcagcgcggcatgacggccgtagccccttattctccccgcgcacgt
cccggtgccggagtttccatgccgctcgcctgggaggaagtcactccggcaattggccct
gcgcattttaccattctcaacacgccgacccggctggctgcgctgaaaagcgatccctgg
caggattttcgcagcgcggaaacgccgctgccgaaaatgaagaagcaaggcgggtga
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