Oncorhynchus keta (chum salmon): 118359036
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Entry
118359036 CDS
T09424
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118359036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118359036
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118359036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
118359036
NCBI-ProteinID:
XP_035593097
EnsemblRapid:
ENSOKEG00005052273
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All DBs
Position
26:complement(18910788..18949555)
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AA seq
559 aa
AA seq
DB search
MSAEMDKTTDASGGDEEEWLYGDEIEEKAEEEAPNSAKAQPTAEEVHENGVVKQDTGQED
EESDSDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKAAGRTHASVGPKAKGVDL
DALGSVNGIPVLEVDIESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRLRMGYEG
MNHASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKQSGTIDVIGGQTG
TISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSAPP
LIPPPRIPINVPPPGYPPGAPPPSLIPTLDRLHYRGSRIRRDGRRKAGDSDINGDGEGRE
HSYCPTRQTVARRTRSGRSGGYDGRSAPPYPPFPPGVYPPPPPGSAAASWAGVFDSAKAW
EYYAQRDNERERHKERDRTRERGHEKEREREREHNPSSQVVNSEEDRHRHRDYGERGYDR
HHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDSHRRHKHKKVKRSRED
KEPSQELSADQENQSEPTE
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaaacaactgatgcaagcgggggcgatgaagaagaatggtta
tatggagatgagattgaggagaaggcagaggaagaggcacctaatagtgcaaaggcccag
ccgactgctgaagaggtccatgagaatggagtagtgaagcaggatacaggccaggaagat
gaagaaagtgacagtgacagtgaggatgatgatgacgtgtgtgtaaccattggcgatata
aagaccggaggctcgtctcagcctttcaatgcttttggatccacaccggttaatctcaac
attaaggctgcagggagaacacatgcgtcagttggccccaaagccaaaggagtggacctg
gatgcactgggcagtgttaacggaatccctgtgttggaggtcgacattgagtcttttgaa
gaaaagccgtggagaaagcctggttcggacctctcagactactttaactatggctttaac
gaggacacctggaagacctactgtgagaaacagaggagactacgcatggggtatgagggc
atgaaccatgcttcagccactaaaatcatggtccaccagggacgttcagcccatggcgat
agggatggggccctttcctgctttaggtctgactattcctcccccagcaaccactacaat
tcaggctcctccagtagaaagcagagcggcaccattgatgttattgggggacaaactggt
accatcagccgggtagagggacgaagacgtcacaatatagaaggaaataacatccaggtg
ctttctgagcccccctctgatgctgagcctactcccactaagatgccccccttttttcct
cccaacatccccccgcctcctttcccgcctccaccccacaatgtcagctccgcccctcca
ctcattcctccaccacggatccccatcaatgttcctccacctggctaccctcctggcgca
ccacctccttctctgattcccaccttagacaggctgcactacagggggagtaggatcagg
agagacggaaggagaaaggctggagacagtgacataaatggagacggagaagggcgagaa
cacagctactgcccaaccagacagactgtagccaggagaacacgcagtggacgctctgga
ggctatgatggtcgctcagctccaccgtacccccccttccctccaggtgtgtaccctcct
cctcccccgggtagcgcagcagcctcctgggccggggtattcgacagtgccaaggcctgg
gagtactacgcgcagcgggacaacgagcgagagcgccacaaggaaagagaccgaaccaga
gaacgtggacacgagaaagaaagagaaagggagagagagcacaacccttcatcccaggtc
gtcaacagtgaggaggatcggcaccggcacagggactatggggagagaggatatgaccgc
caccaccacgagagatccagccgagagaaagaagagagacaccgagagaagagacacaga
gacaaagaggaggggagacacaagtcctcaagcagtagcagcaggaggagacatgagagt
gaggaaggggacagtcatcgaagacacaaacacaagaaggtcaagaggagcagagaggac
aaggagcccagccaggaactctctgctgaccaggagaaccaatcagagcccacagagtga
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