Oncorhynchus keta (chum salmon): 118361076
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Entry
118361076 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oke03009
]
118361076
03036 Chromosome and associated proteins [BR:
oke03036
]
118361076
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118361076
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
Pre-60S particles
Helicases
118361076
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
118361076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GUCT
Helicase_C
DEAD
ResIII
Gly_acyl_tr_C
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
118361076
NCBI-ProteinID:
XP_035596717
LinkDB
All DBs
Position
2:complement(23167198..23183958)
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AA seq
516 aa
AA seq
DB search
MVTSEKVLCLAPTRELAIQVAKDFKDMTKKLSVTCFYGGSSYNPQLDAIRSDIDVLVGTP
GRIKDHLQIYRILDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDNETNPQTLLFS
ATCPPWVYVVAKKYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYS
GSHGRTIVFCETKKDANELSMNTSIKQSSQSLHGDIPQKQREITLKGFRSGTFEFLVATN
IAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRAGVCICFYQRKEEDQLRYVEQK
AGITFQRVGVPTPSDIIKSSSKDAVRFLDSVPPQAIEYFRVAATKLIEERGAVDSLAAAL
AHISGATALEQRSLLNSDDGYTTMTMNYSQELHNIGCAWRGLKEQLGEEIDDVMXGMTFL
KGKMGVCFDVPADKVKEYQDAWQDGRRWQLSIATELPDLEEKQCMGGDRGYGRSFGGCGG
GGRGGGLGFRNGGGGGSNWRGGGGSHKRSFSSAFDY
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccagtgagaaggttctgtgccttgctccaacaagagaattggctattcaagta
gcaaaggatttcaaggacatgacaaagaaactgtctgttacctgtttctatggtgggagt
tcctacaaccctcaacttgatgcaatccgcagtgacatcgatgtcctagtgggaactcca
ggtcgtatcaaggaccatctacagatctacagaatactggacctgtcacaattgaagcac
gttgtattagatgaagtggaccaaatgcttgatatgggctttgcagaacaggtggaggag
atactttctgcatcttaccaaaaagataatgagaccaatccccagaccctgctcttctct
gccacatgcccaccatgggtgtatgttgtggcaaagaagtacatgaggccaacttatgag
catgtggacctcattggcaaaaagacccagaaagctgccaccacagtagagcaccttgcc
attgcgtgtcactggtctcagagggctgcagtcattggggatgtggtccaggtgtacagt
ggcagccacggccgcaccatcgtcttctgtgagaccaagaaggatgccaacgagctgtca
atgaacacctccataaaacagagttcccagtcacttcatggggacattcctcagaagcag
agggagatcacattgaaaggcttcagaagtggcacctttgagttcttggtggccaccaac
attgctgctcgtgggttggacatcccagaggtagacctggtcgtgcagtgctcaccccca
aaggatgtggagtcatacattcaccggtcaggtcgcactggtagggctggcagggcaggc
gtctgcatctgtttctaccaacgcaaagaggaagaccagctccgatacgtagagcagaaa
gcaggcatcacatttcagagagttggagtgcccactcccagtgacatcatcaaatcctcc
agtaaagacgcagtgaggtttttagactctgtgcctccccaagccattgagtacttccgt
gtggctgctaccaagctgattgaggagcgtggggccgtggattccctggctgccgccctg
gcacacatatcaggtgccactgctctggagcagaggtccctcctcaactctgacgatggc
tacaccacaatgacaatgaactactcccaggagctgcacaacattggctgcgcttggcgt
ggtctaaaggagcagctgggagaggagattgacgatgtgatgnnggggatgaccttcctc
aagggaaaaatgggagtctgttttgatgttccagctgacaaagtaaaggagtaccaagat
gcatggcaggatggtaggcgttggcagctgtcaatcgccacagagctccctgacctggag
gagaaacagtgcatgggtggtgaccgtggatacggacgctcgttcggtggatgtggtggt
ggaggacgggggggtggccttggcttcagaaacggcggcggtggtggtagcaactggaga
ggaggtggaggcagtcataaacgcagtttcagcagtgcatttgattattaa
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