Oncorhynchus keta (chum salmon): 118368146
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Entry
118368146 CDS
T09424
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118368146 (nrde2)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118368146 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
GAGA_bind
Rotamase_2
Motif
Other DBs
NCBI-GeneID:
118368146
NCBI-ProteinID:
XP_035607857
EnsemblRapid:
ENSOKEG00005044621
LinkDB
All DBs
Position
35:22645894..22669303
Genome browser
AA seq
1194 aa
AA seq
DB search
MTSYSCDCLHAEAINMALFPAFAGLSNTKPEIAPKELEWLNNQSFRTDDALSLHQRATEK
ANETQSAETSRHVIPEREDKNDVQSNKKKKKEKKKKKKKKKKHKKKSGEPSPASSGSDSD
TIYPSDLLKKAESTPPSEAVQFQVEGSFVWLDDLQTPTDQPFCVDRRADRANWEYKSLYR
GDIARYKRKGFSSLGLNLRSQAVSWAESGPEKKRVDRRQRPNRYFSPTVRQLLMSDGKPT
LPRPPPEDTTTTTLSFIPVPSCLEGEAEGGGSAKGQGSWVNPLGVYDSSTSLWLQGKGKA
EDGKAEEQPTPRDNAAVMLAERVEDFNRRLRETPTDTHTWLQFVLFQDEVAGAPGVFADI
SENESERRKRSVRATLEKKVAILDRAVENNPSCVELKLERLRLCRELWEPAALLKEWKKL
VFLHPNSAPLWRKYLLFMQSHFSTFSVSKVNTVYGKCLSTLAAVQDGSMVSHQMLPGTDE
HMLAIFLQQCHFLRQAGHSEKAVCLFQGLLDFTFFKPDTVKDLPTRQQVEFFEPFWDSGE
PRVGERGASGWRAWMTQQERGGWLQPSEQDDGDEEDQEELEVKDKTWPKWRIWLDVETSR
EAIHWLPWRPDKTKGQSVEDCEDPDRQVLFDDIGPSMIRLVHPDLQLCLLLSFLHFLGLP
ADTSCYSAPSCSLLLDDQALLGDVHHPDSPLTSYALPVPGVSPVGHMTSLQGARRGVGLC
KQGEEFVDNVFQMVLPLFSAQERAVLSLHWIQYEKLKVLRCVRGRNKKRVKSQGKRSKRL
AKRLLKEPENRGRLSLWREYAHLEWLLGNLDEAHKVFDTALGLGVAGGLADPALCDLCLL
YAQLEVEEAWRRDMGGAGTTVTTAMSSPAVYILTKLAEGSSYAPFLGQLAPVAVLKARKA
YEQAVVSSLPGQEEEAAGQGQSKSRQVKGLVGCYALFQYLTVGVDAADAVYNLARKRLEQ
HSSMSAQESASSEVMCDIQTLSSVSECEALAVQQVALLRYHTSTNVYPLSHIRLALTSAL
AHFASSTSLWQLYVQVENRYHSAGRARRFFHSVTKASTSVVPRLFAISAEQQRKQLVDSV
QRSDCCGDTVSSLPENGLSNRIRSLFENAIATEHGVHCPLLWRMYMNFLVSEGKVEKGRG
IFYKALQDVPWAKGLYMDAVQLFPEHVQEFLDLMTEKELRLRVPMEEVDILLED
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatattcatgcgactgtttacacgcagaggctatcaacatggcactatttcca
gcttttgcaggattatcaaatacaaaacctgagattgcacctaaagaactagaatggctg
aacaatcaaagtttccgcactgatgacgctctctctcttcaccaacgagccacggagaaa
gccaacgaaacacaatcggcagaaacaagcagacacgttataccagagagggaggataag
aacgatgtccaatccaacaagaagaaaaagaaggagaagaagaagaagaagaagaaaaag
aagaagcacaagaagaagagtggagaaccctctccagcaagcagtggctcagattcggat
actatctaccccagtgacctcctaaaaaaggctgagagtactcctcccagtgaggcggtt
cagtttcaggtggaggggtcttttgtgtggttggatgacctccagacccccaccgatcag
cccttctgcgtggacaggagagcagaccgtgccaactgggagtacaaatcactttacaga
ggagatatcgctaggtacaaaaggaagggcttttcctctctgggtttgaacctgcggtct
caggccgtgagctgggctgagtctggcccagagaagaagagagtggacaggagacagaga
cccaaccgctacttctcccccaccgtccgccagctgctgatgtctgatggcaaacccacg
ttgcccagacctccaccagaggacaccacaaccaccactttatccttcatccctgtgccc
tcctgtctggaaggtgaggcagaggggggtggctctgccaaaggccagggctcctgggtc
aaccccctgggggtgtatgactcctccacgtccctgtggctccaggggaaggggaaggcg
gaggatggcaaggcagaggaacaacctactcccagggacaatgctgccgtcatgctggct
gaacgggtggaggacttcaataggaggctgagggaaacccccacagacacacacacctgg
cttcagtttgtcctcttccaggacgaggtagctggggcgcctggggtgtttgctgacatc
tctgagaacgagagcgagcggcggaagaggtcagtgcgcgccacgctggagaagaaggta
gccattttggatcgagcagtggagaataacccgagctgtgtggaactgaagctggagcga
ctgcggctctgtagggagttgtgggagccggcagccctgctgaaggagtggaaaaagctg
gtgttcctgcaccccaacagtgcccccctgtggaggaagtacctgctgttcatgcagagc
cacttcagtaccttctccgtgtcaaaggtcaacacggtatacgggaagtgtctgagcacg
ctggcggcggtgcaggatgggagcatggtttcccaccagatgctgccgggcactgatgaa
cacatgctggccatcttcctccagcagtgtcatttcctcaggcaggctggccactcagag
aaagctgtgtgtctgttccagggcctactggacttcaccttcttcaagccagacactgtc
aaggacctacccaccagacaacaggtggagttctttgagccattctgggacagtggggag
ccccgtgtcggggagaggggggccagtggatggagagcctggatgacccagcaggagaga
gggggctggctccaacccagtgaacaagatgatggagatgaagaagatcaggaggaattg
gaggtgaaggataaaacctggcccaagtggaggatctggttggatgtggagacgtcacgc
gaggccatccattggctgccatggaggccggacaaaaccaagggccaatcggtggaggac
tgtgaggacccggaccgacaggtgctgtttgatgacattgggccgtctatgatccggctg
gtccacccagacctccagctatgtcttcttctgtccttcctgcacttcctgggtctgcct
gctgacacttcctgttacagcgccccctcctgtagcctgcttctggatgatcaggctcta
ctgggggatgttcaccatcctgactcaccactgacctcttatgccctccctgttcctggg
gtcagccccgtgggtcacatgacctccctgcagggtgccaggaggggggtggggctgtgt
aagcagggggaggagtttgtagacaacgtgttccagatggttctgcctctgttctctgct
caggagagagctgtcctctcactacactggatccagtatgagaagctcaaggtgctgagg
tgcgtgcgcggcaggaacaagaagcgtgtgaaatcccaggggaagaggagcaagcgcctg
gccaagcgcctgctgaaggagccagagaaccggggccgcctcagcctgtggagggagtac
gcccacctggagtggctgctagggaatttggacgaggcccacaaggtgttcgacacagcc
ctgggactgggcgtggcaggagggctggcagaccctgccctgtgtgacctctgcctgctc
tacgcccagctggaggtggaggaggcctggcgaagggatatgggcggggcagggacgact
gttacgaccgccatgtcttcaccagcggtctatatcctcaccaagctagcagagggtagt
tcgtatgcccccttcttgggacagttggctccagtggccgtgctgaaggccaggaaggcc
tatgagcaggctgtggtgagctccctgcctgggcaggaggaggaggccgcggggcagggg
caatccaagtccaggcaggtcaaaggtctggtggggtgttacgccctattccagtacctg
actgtgggggttgatgctgctgatgctgtctacaacctggctagaaagaggctggagcaa
cactccagtatgtcagcccaggagtcagctagcagtgaagttatgtgtgacatacagaca
ctgagctctgtctcagagtgtgaggccctggctgtccagcaggtggcgctactgcgctac
cacaccagcaccaacgtgtacccacttagccatatcagactggcgctgacctcggccctg
gcccactttgcctccagcacttctctgtggcagttgtatgtgcaggtggagaaccgctac
catagcgctggcagggctcgccgcttcttccacagcgtgaccaaggctagtacaagtgtc
gtgccacgcctgttcgccatcagcgcagagcagcaaaggaagcagctagtggactctgtt
cagaggtctgattgctgtggtgacaccgtctccagcctgccagagaacggcctgagcaac
cgtatccgctcgctgtttgagaatgccatagcaacagagcacggggtccactgtccattg
ctgtggaggatgtacatgaacttcctggtgtcagaggggaaggtggagaagggaagaggt
atcttctacaaggctctacaggacgtcccatgggcaaagggtttatacatggacgcggtg
caactcttccctgagcacgtgcaggagttcctggacctgatgaccgagaaggagctcaga
ctgagggttcccatggaggaggtggacatactgctggaggactga
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