KEGG   Oncorhynchus keta (chum salmon): 118370112
Entry
118370112         CDS       T09424                                 
Symbol
lig4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    118370112 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oke03400]
    118370112 (lig4)
Enzymes [BR:oke01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     118370112 (lig4)
DNA repair and recombination proteins [BR:oke03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     118370112 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT_2 BRCT RNA_ligase DUF4607
Other DBs
NCBI-GeneID: 118370112
NCBI-ProteinID: XP_035610810
EnsemblRapid: ENSOKEG00005034104
LinkDB
Position
37:5815768..5820110
AA seq 914 aa
MEGTSKSESAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERVAYGIKESLLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCRQLHDPFVS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTTDTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGMERPEVFIDPCNSVIIQVKAAEIVSSEMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDEPEKKKRKSPAAAKPKKAVGVIDHFKSQDLSGV
TKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDSYCVIAAVENMRVKNL
ISSDQHDVVWAAWLLECLDRKQVVPWQPRHMIHISPSTKEHFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRVDTLTAQCIAKLEEHFSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPAT
CLDTRALEFRFYGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq 2745 nt   +upstreamnt  +downstreamnt
atggagggaacctcaaaaagcgaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactccttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtgtggcctatggcattaaagagagtctgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggagacttcgctcttatgacctactttgtgttaaaa
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgctggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgattctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tacaacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctttgtgtcc
ctcagcgaagtgtccattggcctcttctttgccttcaaacctatgctggccgctgtggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccacgtagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactaccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactctgagctgcagacgtgcttttgtgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtaaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccagagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttcctcgtcgcggtggccgaagctccgaagcctgga
gagaaaccctctgttttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggttgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggatggagagaccggaagtcttcattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgagatgtacaaaaccaactgc
acgctacgcttcccaaggatcgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacaatgacgagcctgaaaagaagaagcgcaagtcgccggcagcggcc
aagcccaagaaagctgtcggcgtcatcgatcacttcaagtcccaggacctatctggcgtt
accaaggagacggacatgttcgaggacgtggagttctgcgttatgaatggcaatgaggcg
caccccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggactcctactgtgtgatcgccgctgtggagaacatgcgcgtgaagaacctg
atctcttcagaccagcacgacgtagtgtgggctgcctggctgctggagtgcctagacagg
aagcaggtggtgccatggcaaccacgtcacatgatacacatttcaccctccaccaaggag
cactttgccaaggaatacgactgctacggagacagctactttgtggacacagacgagcag
cagctgagggaagtcttcggtcggattggtagagtggacactttgacggcacagtgcatc
gctaagttggaggaacacttcagctgggatgacctccccactagcatgttcagacctttc
agggtctacatggacagatacgcagacataggagaccctaaaagcatcgtaccggcaact
tgtctggacacgcgggctctggaattccgcttctacggagggacagtagtgcagaagctt
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagaatct
atcaaagcagggtttttgcgtaatgacaatgactacctagtgtaa

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