Oncorhynchus keta (chum salmon): 118370112
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Entry
118370112 CDS
T09424
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118370112 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118370112 (lig4)
Enzymes [BR:
oke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118370112 (lig4)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118370112 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
DUF4607
Motif
Other DBs
NCBI-GeneID:
118370112
NCBI-ProteinID:
XP_035610810
EnsemblRapid:
ENSOKEG00005034104
LinkDB
All DBs
Position
37:5815768..5820110
Genome browser
AA seq
914 aa
AA seq
DB search
MEGTSKSESAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERVAYGIKESLLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCRQLHDPFVS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTTDTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGMERPEVFIDPCNSVIIQVKAAEIVSSEMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDEPEKKKRKSPAAAKPKKAVGVIDHFKSQDLSGV
TKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDSYCVIAAVENMRVKNL
ISSDQHDVVWAAWLLECLDRKQVVPWQPRHMIHISPSTKEHFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRVDTLTAQCIAKLEEHFSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPAT
CLDTRALEFRFYGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagcgaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactccttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtgtggcctatggcattaaagagagtctgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggagacttcgctcttatgacctactttgtgttaaaa
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgctggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgattctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tacaacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctttgtgtcc
ctcagcgaagtgtccattggcctcttctttgccttcaaacctatgctggccgctgtggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccacgtagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactaccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactctgagctgcagacgtgcttttgtgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtaaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccagagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttcctcgtcgcggtggccgaagctccgaagcctgga
gagaaaccctctgttttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggttgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggatggagagaccggaagtcttcattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgagatgtacaaaaccaactgc
acgctacgcttcccaaggatcgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacaatgacgagcctgaaaagaagaagcgcaagtcgccggcagcggcc
aagcccaagaaagctgtcggcgtcatcgatcacttcaagtcccaggacctatctggcgtt
accaaggagacggacatgttcgaggacgtggagttctgcgttatgaatggcaatgaggcg
caccccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggactcctactgtgtgatcgccgctgtggagaacatgcgcgtgaagaacctg
atctcttcagaccagcacgacgtagtgtgggctgcctggctgctggagtgcctagacagg
aagcaggtggtgccatggcaaccacgtcacatgatacacatttcaccctccaccaaggag
cactttgccaaggaatacgactgctacggagacagctactttgtggacacagacgagcag
cagctgagggaagtcttcggtcggattggtagagtggacactttgacggcacagtgcatc
gctaagttggaggaacacttcagctgggatgacctccccactagcatgttcagacctttc
agggtctacatggacagatacgcagacataggagaccctaaaagcatcgtaccggcaact
tgtctggacacgcgggctctggaattccgcttctacggagggacagtagtgcagaagctt
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagaatct
atcaaagcagggtttttgcgtaatgacaatgactacctagtgtaa
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integrated database retrieval system