Oncorhynchus keta (chum salmon): 118377351
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Entry
118377351 CDS
T09424
Symbol
hdac6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oke01009
]
118377351 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118377351 (hdac6)
04131 Membrane trafficking [BR:
oke04131
]
118377351 (hdac6)
03036 Chromosome and associated proteins [BR:
oke03036
]
118377351 (hdac6)
Enzymes [BR:
oke01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
118377351 (hdac6)
Protein phosphatases and associated proteins [BR:
oke01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118377351 (hdac6)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
118377351 (hdac6)
Membrane trafficking [BR:
oke04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
118377351 (hdac6)
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
118377351 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
118377351
NCBI-ProteinID:
XP_052340127
EnsemblRapid:
ENSOKEG00005012933
LinkDB
All DBs
Position
28:2837039..2885662
Genome browser
AA seq
1041 aa
AA seq
DB search
MESVPEPRSVRRSPRTSNSPDHNAAKKESGKTRKKTSNLQETRRRGRMDRSKGEEDIANQ
LNNLDLCNEASATGTGLVFDSLFTHHRCLWDPSHPECPERVSTVMDMVEKQGLLSRCVTV
ETRAASNEELHLVHTKEYVDLMRSTQHMDEDQLKTLADSYDSVYIHPESYTCASLAVGSV
LQLVDKVMTSELRNGFSVARPPGHHAQVDQMNGYCMFNNLAIAARYAQTRHRVERVLIVD
WDVHHGQGIQYIFQEDPSVLYFSVHRYEEGLFWPHLPESDSSAVGTGSGEGYNINLPWNK
IGMKDADYVAAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMSASPQCFSVLTHMLL
GLAQGKLLLVLEGGYNLQSTAEGVCACLRSLLGESCPRLGSPSIPSDSALKSMSRSISAL
YPYWTSLQVLGKTLGQVNPHPSGEKAQXRDSLDLNGPVGQRMMEHHNMWDSHHPELPQRI
QCIFSRHDDLGLVSRCLRIPARLALEEELALCHSLEHIAKIKATEGMKTRDLHRLGDEYN
SIFISTESYRSARLAAGACFNAVQAVLTGQVRNGVAIVRPPGHHAEKDAACGFCFFNTAS
LTARYAQSISQKPLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPTSEDAH
YNRVGEGKGAGFNVNIPWNGAKMGDAEYLAAFHSVVRPIAREFDPGLVLVSAGFDAARGD
PLGGYQVTPPGYAHLTHLLMGLAGGRVLVILEGGYNLTAISESMSACTSILLGDPALPLP
PLPPPHPNAAVSINKVIRTHSAYWLSLRIQLPESLRLSLPNPKPRGKRTSKGKKSPRQGN
QGGASPGQGSHRGDLDLDDLTKGLVSLDLNQSTSANPSPASVPVGGARSKVRLSPTKSPV
VKEVKTEAVPNTPEILRPTPAVAMATSDPVTKGDQESGAVEGASGCSKEPVFELFCGNQD
VDGSSMYVVDPLSWCPHLDSVRPVPVGGIDVFRPCEDCGTDTENWICLCCYKVYCGRYVT
STSTCYHPRRGGVKIAQGQLV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgtgccagagcccaggtctgtcagacgttcccctcgcacgtcaaattcgccg
gaccacaacgcagccaaaaaggagagcggcaagacccggaagaagacgagcaacctgcag
gagactcggaggagaggaagaatggacagaagtaaaggagaggaggacatagccaatcaa
ctgaacaacctggatctatgtaacgaggcttcagccacggggactggtctggtgtttgac
agcttgttcacacaccatcgctgtctctgggatcccagccacccagaatgcccagagaga
gtgagcactgtaatggacatggtggagaaacagggactgctgtcccgctgtgttacagtg
gagacgagggctgcgtctaacgaagagctgcacttagttcacacgaaggagtatgtagat
ctgatgaggtccactcagcatatggacgaagaccagctgaagacgctggctgactcctat
gactcagtctacatccaccctgagtcatatacgtgtgccagtctggctgtgggctctgtt
ctgcagctggttgataaggtcatgacctcagagctccggaatggattctctgttgctaga
cctccaggccaccacgcccaggtcgaccagatgaatggttactgtatgttcaataatctg
gccattgcagcgcgctacgcacagacacgccatcgagtggaacgagttctgatagtggac
tgggatgtgcatcacggccaggggatccagtacattttccaggaggatcccagcgttctg
tacttctcagtccacagatatgaggagggtttgttctggccccatctgcccgagtcagac
agcagtgctgtgggcaccggttctggggagggatacaacatcaacctgccctggaataag
attggaatgaaagatgcagactacgttgccgcattccagcagcttcttttgcctgtagcc
tacgagttccagcctcagcttgtcctggtggcagcaggcttcgactctgtgataggtgat
cccaagggagagatgtctgccagtcctcagtgtttctctgttctgactcacatgctgctg
ggcctggctcaggggaagttgctgttggttctcgagggaggatataacctacagtccaca
gcagaaggggtatgtgcctgtctgaggtcactattgggggagtcctgcccccgcttgggg
tcaccatccatcccgagtgacagtgccctgaaatccatgtccaggtctatctctgctctg
tacccttactggaccagtctgcaggtactgggtaaaacattgggacaggtgaaccctcac
ccatcaggtgagaaagctcaatgaagagacagcctggacctgaacgggcctgtgggacag
aggatgatggaacatcacaacatgtgggacagccaccacccagagcttccccagaggatc
cagtgtatcttctctcgtcatgacgacctgggcttggtgtcccgttgcctgaggataccg
gctcgacttgccttagaggaggagctggctctgtgccacagcttggagcacatagccaag
atcaaggccacagagggaatgaagacgagggaccttcacagactgggagatgagtacaac
tctatcttcatcagtactgagagctacaggagcgcccggttggccgctggggcctgcttt
aatgcagtacaggctgttctgacgggacaggtccgtaatggcgtggccatcgtgcgcccc
cctggtcaccatgccgagaaggacgctgcctgtgggttctgtttcttcaacaccgcctcc
ctgactgcccgatacgcccagtccatctcccagaagcccctgcgggtcctcatcctggac
tgggatgttcaccatggcaacggaacacagcacatcttcgaagaggatgacagtgtcctc
tacatctccctgcatcgctacgaggatgggaccttcttccctacttccgaggacgctcac
tacaacagagtgggcgaggggaagggagcagggttcaacgtcaacatcccctggaacgga
gccaagatgggcgacgcggagtaccttgcagctttccactcagtggtcaggcccatcgct
agagagtttgacccgggcctggttctggtatcggcagggtttgatgcagccagaggggac
cctctaggagggtaccaagtgacccccccgggctatgcccacctcacccacctcctgatg
ggcctggcaggcggcagagtattggtcatcctggagggtggttataacctgactgccatt
tcggaatctatgtctgcctgcaccagcattctcctgggagaccccgctctgcccctgcct
cccttgcccccacctcaccccaacgcagcagtcagcatcaacaaggtcatacgcacccac
tccgcctattggctgtccctcaggatacaactaccagagtctctccgtctgtctctgcca
aaccccaaaccccgagggaagaggacttctaagggcaagaagtctcccagacagggtaac
cagggcggggccagccctggtcaggggtcacatcggggcgaccttgacctagatgacctc
acaaagggactggtgtcactcgacctaaaccaaagtacctcagccaatcccagcccagcg
tccgtccccgtgggtggagccaggtcgaaggtgaggctcagtcctacgaagagcccagtt
gttaaagaggtcaagacggaagctgttccaaatacgcccgagattctccgaccaacgccg
gcggtcgccatggctacctcagacccagttaccaagggagaccaggagagcggtgcggtg
gaaggggcgtctggttgctccaaggagccggtgtttgagctgttctgtggaaaccaggat
gtggacgggagctccatgtacgtggtagatcccctgtcctggtgcccccacctagactca
gtgaggcctgttcctgttggaggtatagatgtgtttcggccctgtgaggactgtggaacc
gacactgagaactggatctgtctctgctgctacaaggtgtactgtggtcgctatgtcacc
tctaccagcacatgttaccacccacggcgtggcggtgtgaagatagcacagggccagtta
gtctga
DBGET
integrated database retrieval system
